Team:Groningen/Modeling

From 2012.igem.org

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If you choose to include a '''Modeling''' page, please write about your modeling adventures here. This is not necessary but it may be a nice list to include.
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'''Modeling Targets'''
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<br>
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'''''Germination'''''
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# Effects of h2o and L-alanine concentrations on germination rate.
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'''''Volatile production'''''
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# Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)
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'''''Normal operation'''''
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# Receptor sensitivities
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#* Binding rate as a function of volatile concentration (TAAR5)
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# Diffusion rates
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#* Through the membrane (nh4_diffusion, h_diffusion)
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#* Through ion channels (nh4_ion)
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# Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
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# Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
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# Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
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# Opacity as a function of lycopene concentration
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'''''OMIX visualization through reaction pathways'''''

Revision as of 17:35, 10 May 2012

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Modeling Targets
Germination

  1. Effects of h2o and L-alanine concentrations on germination rate.

Volatile production

  1. Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)

Normal operation

  1. Receptor sensitivities
    • Binding rate as a function of volatile concentration (TAAR5)
  2. Diffusion rates
    • Through the membrane (nh4_diffusion, h_diffusion)
    • Through ion channels (nh4_ion)
  3. Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
  4. Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
  5. Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
  6. Opacity as a function of lycopene concentration

OMIX visualization through reaction pathways

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