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Team:Evry/Project
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| - | <h3 style="text-align: center; padding-top:10px;">The French Froggies Project</h3> | + | <h3 style="text-align: center; padding-top:10px;">The French Froggies Project</h3><br> |
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| - | <a href="#frog" style="text-decoration:none;"><li>A new multicellular chassis for synthetic biology: <i>Xenopus tropicalis</i></li></a> | + | <a href="#frog" style="text-decoration:none;"><li>A new multicellular chassis for synthetic biology: <i>Xenopus tropicalis</i></li></a><br> |
| - | <a href="#model" style="text-decoration:none;"><li>Engineering a synthetic, orthogonal hormone as a communication device</li></a> | + | <a href="#model" style="text-decoration:none;"><li>Engineering a synthetic, orthogonal hormone as a communication device</li></a><br> |
| - | <a href="#game" style="text-decoration:none;"><li>Goldenbrick: A new Biobrick standard for one-shot assembly of multiple parts</li></a> | + | <a href="#game" style="text-decoration:none;"><li>Goldenbrick: A new Biobrick standard for one-shot assembly of multiple parts</li></a><br> |
<a href="#human" style="text-decoration:none;"><li>Modelling: A multi-level approach to model synthetic systems in multicellular organisms | <a href="#human" style="text-decoration:none;"><li>Modelling: A multi-level approach to model synthetic systems in multicellular organisms | ||
| - | </li></a> | + | </li></a><br> |
| - | <a href="#human" style="text-decoration:none;"><li>We collaborated with La Paillasse community lab to create an augmented reality interface for interacting with tadpoles </li></a> | + | <a href="#human" style="text-decoration:none;"><li>We collaborated with La Paillasse community lab to create an augmented reality interface for interacting with tadpoles </li></a><br> |
<a href="#human" style="text-decoration:none;"><li>We studied the ethical and legal implication of using vertebrate organisms for synthetic | <a href="#human" style="text-decoration:none;"><li>We studied the ethical and legal implication of using vertebrate organisms for synthetic | ||
biology | biology | ||
| - | </li></a> | + | </li></a><br> |
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Revision as of 21:14, 23 September 2012
Project overview
For our first participation in iGEM, we have decided to introduce a new organism to the competition: Xenopus tropicalis. Its common name is the Western clawed frog, a diploid cousin of the model organism Xenopus laevis. Aside for the soft spot us Frenchmen have for frogs, we also believe Xenopus could be a great multicellular chassis for synthetic biology. We are therefore bringing this organism to iGEM for the first time, along with the tools we need to bring Synthetic biology to the multicellular era.
The laboratory part of our work can be divided into two categories: The creation of synthetic biology tools for Xenopus, and the creation of a synthetic hormonal system. We created a multi-level model of this inter-tissue communication system, concurrently laying the groundwork for modelling of synthetic genetic systems in multicellular organisms. Finally, using vertebrates in synthetic biology poses deep ethical problems, which come alongside those of animal experimentation. iGEM aims to be cool and fun, but can we or should be keep the same attitude when working with tadpole embryos ? Should we reduce animals to objects or tools by using words such as chassis when working with these multicellular organisms? Our resident philosopher lead our team’s reflection on these issues, proposing a guide for future synthetic biologists who wish to work with Xenopus.
A quick summary of each project is proposed in this page. Please go on the specific page of each project for more details!
Xenopus tropicalis: A new chassis for multicellular synthetic biology
While iGEM has so far been mostly focused on en engineering unicellular organisms and bacteria in particular, we have decided work on the next step for synthetic biology: Multicellular engineering. Using our new biobrick tools, the road towards synthetic circuits in Xenopus is open, multiplying the number of potential applications in terms of synthetic biology.
Xenopus tropicalis is a model organism for developmental biology. Rapid development, easy handling and direct injection of plasmids into the fertilized egg allow testing of constructs in less than two weeks. We provide frog compatible plasmids for using this system in biobrick standard format. We have submitted two complementary systems: The first allows rapid testing of the system, but in a transient way. It also includes tools for debugging of the system. Once a working system is in place, it can be reassembled and integrated on the chromosome for longer-term use.
A synthetic, orthogonal hormonal system
In order to be able to bring synthetic biology to multicellular organisms, it is essential that we have a communication device enabling cell-to-cell or tissue-to-tissue communication. We have advanced towards the implementation of the first synthetic hormone, which would allow communication between cells in an orthogonal manner. We have submitted an auxin receiver device to the registry, for use in combination with an auxin production system that we have adapted for eukaryotic chassis.
Modeling a tadpole: a multi-level approach
Modeling a synthetic system at the whole organism scale is a challenge in itself. Using differential equations and agent based simulation, we aimed at modeling our entire synthetic hormonal system, as well as providing a new set of mathematical tool for iGEM in order to model complete organisms.
Cloning: a new biobrick cloning format
We have started the development ou a new biobrick format that may revolutionize the future of iGEM cloning by enabeling the assembly of a complete expression cassette in one shot, in a cheaper and most reliable way than all the current cloning method. We are the initiator of that project and we are going to develop it in partneship with the iGEM Paris Bettencourt and the CINVESTAV-IPN-UNAM_MX team in Mexico.
Human practice: What does it imply to engineer a multicellular organism
Working with vertebrates raises many ethical questions. We decided to track the changes in our attitude to animal experimentation during our project. Before starting our experiments, we answered a list of questions concerning the ethical aspects of our project. Our answers were based on a theoretical perspective, because most of us have never worked with live multicellular organisms before. We will continue our survey and observe the changes in our attitude with the advancement of our project. Because we are a multinational team, we are also interested in comparing animal rights in different parts of the world.
