Team:Peking/HumanPractice/HistoriciGEMProjectsReview

From 2012.igem.org

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Summary goes here.
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Sharing and learning from each other is one of the most important figures for iGEM competition, in that any lack of experience could be well ameliorated by studying the projects and the way of presenting them of other and/or previous teams.
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<br /> <br />
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We here present you with a collection and praise of historic iGEM projects. Though these projects selected may not comprehensively include all the meritorious projects of each aspect, we managed to introduce you some representative projects from different perspective. And we hope this collection might help iGEMers with their projects and presentations.
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An excellent example for utilizing dynamics modeling to greatly broaden the linear range, thus facilitating application in field of this particular biopart.
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The first amazing modeling project for you is from Peking 2010 team. As they were endeavoring in the development of a sensing circuit for heavy metals, the linear range should be broad enough to include a change of several magnitudes. Taking an informative Biological Network Reverse Engineering approach to guide the circuit design, they were finally able to enhance the function to a next level.
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One of the masterworks of interdisciplinary modeling, incorporating macro-scale population modeling, genetic regulation network as well as protein overlap structures– all together with explicit ODE equations and pellucid images.
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Then it comes to the modeling work of British Columbia of 2011. They have presented an example for an extension of traditional modeling. The protein structure alignment and the docking of the small molecule gave them information on what residues were responsible for the synthesis of terpene and thus for the synthase’s modification.
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The excellencies of the stochastic agent and rule-based Kappa language established a firm basis for both genetic and signal transduction modeling, and thus introduced a brand new and powerful modeling tool.
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In order to model the core repressilator system, Edinburg 2010 inventively developed a stochastic agent and rule-based language called Kappa. In Kappa, proteins, DNA, and RNA are represented as agents that can be used to hold state or interact with other agents. And with kappa, they are able to assimilate the oscillation of the population of bacteria and the level of proteins.
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An outstanding example for kinetic modeling, with characterized video illustrations presenting a vivid kinetic diffusion process.
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What to taste something more than traditional dynamic modeling? Paris Bettencourt 2010 showed us an outstanding example of kinetic modeling and it came along with a real-time video illustration for readers to directly understand what is going on with the diffusion process.
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Gorgeous! A powerful and user-friendly designed modeling software (BSim) developed to facilitate a better environmental modeling, together with an intensive interrogation of actual cost.
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Only developing a set of functional beads is in itself incomplete, as the key to a useful tool is to let others characterize the beads in their own projects. And this originally developed software, BSim, is not only user-friendly, but also perfectly characterizes the behavior of their beads.
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   <a href="https://2009.igem.org/Team:Valencia">
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   <a href="https://2009.igem.org/Team:Cambridge">
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   <img src="/wiki/images/d/da/Peking2012_HumanPractice_Review_Fig6_Valencia2009.gif" alt="" title="Valencia 2009" style="width:220px;" />
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   <img src="/wiki/images/9/98/Peking2012_HumanPractice_Review_Fig7_Cambridge2009.png" alt="" title="Cambridge 2009" style="width:220px;" />
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A wonderful combination of electrical engineering and voltage-sensitive cells. And the idea of iLCD represents a visual impact illustrating the characteristics of their biobrick and the charm of interdisciplinary research.
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Colors and light should always be something attractive on an iGEM competition. And the Cambridge team of 2010 and 2009 certainly understand this and take it to their advantage.
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Valencia 2009
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Cambridge 2009
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   <a href="https://2009.igem.org/Team:Cambridge">
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   <img src="/wiki/images/9/98/Peking2012_HumanPractice_Review_Fig7_Cambridge2009.png" alt="" title="Cambridge 2009" style="width:220px;" />
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   <img src="/wiki/images/5/57/Peking2012_HumanPractice_Review_Fig8_Cambridge2010.png" alt="" title="Cambridge 2010" style="width:220px;" />
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An integration of full spectrum pigments is illustrated by a colorful gallery of E.coli.  <br />
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Their 2010 work of lightening cells with different luciferases and their 2009 work of transmitting different pigments of different colors are both applicable and charming projects for the competition. A simple array of colors and lights would just tell the whole story.
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Such a project requires a comprehensive understanding of both chemistry, effective display of chemicals in E.coli, and the subtleness in fine tuning.
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Cambridge 2009
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Cambridge 2010
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   <a href="https://2010.igem.org/Team:Cambridge">
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   <a href="https://2010.igem.org/Team:BCCS-Bristol">
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   <img src="/wiki/images/5/57/Peking2012_HumanPractice_Review_Fig8_Cambridge2010.png" alt="" title="Cambridge 2010" style="width:220px;" />
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   <img src="/wiki/images/7/77/Peking2012_HumanPractice_Review_Fig9_BCCS_Bristol2010.png" alt="" title="BCCS-Bristol 2010" style="width:220px;" />
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Light and colors are never off the grid! A new generation of genetically programmed & optimized luciferase and their compatible luciferin sees a bright future. <br />
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Now here goes the project of Bristol 2010. The incorporation of engineered E. coli into beads will not only extend the territory of this biobrick, but also will help with possible commercialization. The combination of field application and lab design will always remain the most exciting part of iGEM!
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Illustrated by high resolution images and videos, the project impresses everyone.
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Cambridge 2010
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BCCS-Bristol 2010
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   <a href="https://2010.igem.org/Team:BCCS-Bristol">
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   <img src="/wiki/images/7/77/Peking2012_HumanPractice_Review_Fig9_BCCS_Bristol2010.png" alt="" title="BCCS-Bristol 2010" style="width:220px;" />
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   <img src="/wiki/images/d/da/Peking2012_HumanPractice_Review_Fig6_Valencia2009.gif" alt="" title="Valencia 2009" style="width:220px;" />
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The incorporation of engineered E. coli into beads will not only extend the territory of this biobrick, but also will help with possible commercialization. <br />
+
What would happen when electricity meets synthetic biology? Valencia 2009 team presented a wonderful combination of electrical engineering and voltage-sensitive cells. And the idea of iLCD gives a visual impact illustrating the characteristics of their biobrick and the charm of interdisciplinary research.
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The combination of field application and lab design will always remain the most exciting part of iGEM!
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BCCS-Bristol 2010
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Valencia 2009
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One of the most exciting projects pertaining enhancement and organization of biosynthesis by DNA scaffold. <br />
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DNA scaffold? Aligned proteins? Is ELISA the only way to characterize its function with those boring curves and numbers? The 2010 team of Slovenia said no! Spatially related fluorescent proteins would undergo a process called Fluorescent Resonance Energy Transfer. And seeing the emission of fluorescence sure catches more intention then those curves, right?
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And the oscillator application greatly reveals the potentials of a well designed and rationally aligned synthases.
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Though text and photos are garbled at the front-page , this wiki enjoys an elegant design in its navigation bar, which is not only informative, but also convenient for users from all kinds of backgrounds.
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Completely lost when you are looking for some specific information in a wiki? Paris 2011 says a good navigation system would help. Though text and photos are garbled at the front-page , this wiki enjoys an elegant design in its navigation bar, which is not only informative, but also convenient for users from all kinds of backgrounds.
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Explicit illustration at frontpage not only avoids prolonged texture and makes the whole page more compact, but also eased the tension of serious scientific research. <br />
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As for the elegant wiki of Washington 2011, people would be touched by first sight. Explicit illustration at frontpage not only avoids prolonged texture and makes the whole page more compact, but also eased the tension of serious scientific research. If you want an eye-catching and informative wiki, this is it!
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If you want an eye-catching and informative wiki, this is it!
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The introduction of a rotating gallery containing each individual module of the whole wiki also compacts the space, but this format requires inclusive consideration on timing, picture choosing and more efficient wording.
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Other styles also convey their stories effectively, such as the wiki of Imperial College London 2011. The introduction of a rotating gallery containing each individual module of the whole wiki also saves space, but this format requires inclusive consideration on timing, picture choosing and more efficient wording
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The usage of pure-color squares and the combination of carefully aligned, differently sized squares gives out an impression of well organization and explicitness.
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Aesthetics is another core element come to a wiki constructor’s mind. And the wiki of Heidelberg in 2009 serves as a good example. The usage of pure-color squares and the combination of carefully aligned, differently sized squares gives out an impression of well organization and explicitness.
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For those teams who wrote their own codes and constructed their own system of wiki, their wiki should be highly appreciated and honored. <br />
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Well, a wiki does not come out of nowhere. Good coding not only guarantees a good wiki website but also facilitates those who want to learn from the wiki’s construction. For those teams who wrote their own codes and constructed their own system of wiki, their wiki should be highly appreciated and honored. By the way, this year, Peking's Wiki System is also written by ourselves, character by character!
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By the way, this year, Peking's Wiki System is also written by themselves, character by character!
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Revision as of 02:47, 6 September 2012

Overview
    • Summary

      Sharing and learning from each other is one of the most important figures for iGEM competition, in that any lack of experience could be well ameliorated by studying the projects and the way of presenting them of other and/or previous teams.

      We here present you with a collection and praise of historic iGEM projects. Though these projects selected may not comprehensively include all the meritorious projects of each aspect, we managed to introduce you some representative projects from different perspective. And we hope this collection might help iGEMers with their projects and presentations.

    • 5 Meritorious Projects: Modeling

      The first amazing modeling project for you is from Peking 2010 team. As they were endeavoring in the development of a sensing circuit for heavy metals, the linear range should be broad enough to include a change of several magnitudes. Taking an informative Biological Network Reverse Engineering approach to guide the circuit design, they were finally able to enhance the function to a next level.

      Peking 2010

      Then it comes to the modeling work of British Columbia of 2011. They have presented an example for an extension of traditional modeling. The protein structure alignment and the docking of the small molecule gave them information on what residues were responsible for the synthesis of terpene and thus for the synthase’s modification.

      Brithsh Columbia 2011

      In order to model the core repressilator system, Edinburg 2010 inventively developed a stochastic agent and rule-based language called Kappa. In Kappa, proteins, DNA, and RNA are represented as agents that can be used to hold state or interact with other agents. And with kappa, they are able to assimilate the oscillation of the population of bacteria and the level of proteins.

      Edinburgh 2010

      What to taste something more than traditional dynamic modeling? Paris Bettencourt 2010 showed us an outstanding example of kinetic modeling and it came along with a real-time video illustration for readers to directly understand what is going on with the diffusion process.

      Paris Bettencourt 2011

      Only developing a set of functional beads is in itself incomplete, as the key to a useful tool is to let others characterize the beads in their own projects. And this originally developed software, BSim, is not only user-friendly, but also perfectly characterizes the behavior of their beads.

      BCCS-Bristol 2010

    • 5 Meritorious Projects: Demonstration

      Colors and light should always be something attractive on an iGEM competition. And the Cambridge team of 2010 and 2009 certainly understand this and take it to their advantage.

      Cambridge 2009

      Their 2010 work of lightening cells with different luciferases and their 2009 work of transmitting different pigments of different colors are both applicable and charming projects for the competition. A simple array of colors and lights would just tell the whole story.

      Cambridge 2010

      Now here goes the project of Bristol 2010. The incorporation of engineered E. coli into beads will not only extend the territory of this biobrick, but also will help with possible commercialization. The combination of field application and lab design will always remain the most exciting part of iGEM!

      BCCS-Bristol 2010

      What would happen when electricity meets synthetic biology? Valencia 2009 team presented a wonderful combination of electrical engineering and voltage-sensitive cells. And the idea of iLCD gives a visual impact illustrating the characteristics of their biobrick and the charm of interdisciplinary research.

      Valencia 2009

      DNA scaffold? Aligned proteins? Is ELISA the only way to characterize its function with those boring curves and numbers? The 2010 team of Slovenia said no! Spatially related fluorescent proteins would undergo a process called Fluorescent Resonance Energy Transfer. And seeing the emission of fluorescence sure catches more intention then those curves, right?

      Slovenia 2010

    • 5 Meritorious Projects: Wiki

      Completely lost when you are looking for some specific information in a wiki? Paris 2011 says a good navigation system would help. Though text and photos are garbled at the front-page , this wiki enjoys an elegant design in its navigation bar, which is not only informative, but also convenient for users from all kinds of backgrounds.

      Paris Bettencourt 2011

      As for the elegant wiki of Washington 2011, people would be touched by first sight. Explicit illustration at frontpage not only avoids prolonged texture and makes the whole page more compact, but also eased the tension of serious scientific research. If you want an eye-catching and informative wiki, this is it!

      Washington 2011

      Other styles also convey their stories effectively, such as the wiki of Imperial College London 2011. The introduction of a rotating gallery containing each individual module of the whole wiki also saves space, but this format requires inclusive consideration on timing, picture choosing and more efficient wording

      Imperial College London 2011

      Aesthetics is another core element come to a wiki constructor’s mind. And the wiki of Heidelberg in 2009 serves as a good example. The usage of pure-color squares and the combination of carefully aligned, differently sized squares gives out an impression of well organization and explicitness.

      Heidelberg 2009

      Well, a wiki does not come out of nowhere. Good coding not only guarantees a good wiki website but also facilitates those who want to learn from the wiki’s construction. For those teams who wrote their own codes and constructed their own system of wiki, their wiki should be highly appreciated and honored. By the way, this year, Peking's Wiki System is also written by ourselves, character by character!

      Cambridge 2011

    • 5 Meritorious Projects: Human Practice

      Collaboration and exchange of ideas remain the most exciting and active elements of a competition like iGEM, while this is also a core quality of future scientists.
      And their Radio iGEM is a new platform for fun and understanding each other.

      Imperial College London 2011

      As a burgeoning field of study, synthetic biology not only asks for wild imaginations but also active and motivated new participants, this ternary human practice project includes both and more.

      British Columbia 2011

      In their endeavor to broaden the impact of synthetic biology, the iGEMers of Brown-Stanford 2011 took it to the next level: BBC interviews and Maker Faire NYC. This is sure something big.

      Brown-Stanford 2011

      For those teams more focusing on investigations rather than outreaching activities, this projects could be of great inspiration.

      NYC Wetware 2011

      How to present your human practice projects? And to what extent should our concern extend?
      For the 1st question: film it!
      For the 2nd question: how synthetic biology could help with the most serious problems of human.

      Imperial College London 2010

    • 5 Meritorious Projects: Presentation

      Wonderful combination of wet and dry lab in the presentation.
      And a piece of video of suitable timing can convey different information in a different way.

      Imperial College London 2010

      Pellucid logic with inviting skills of introducing a project from its origin to its achievement, from problem faced to their solutions.
      A perfect example of clothing on stage, relative to their subject.

      Imperial College London 2011

      What if each module contains rather professional knowledge that make it difficult to be accomplished by one or two narrators?
      This would be an example to illustrate interdisciplinary cooperation and division.

      Cambridge 2009

      Reasonable color matching of slides (black background is always the best choice for projects about light), and so much enthusiasm and team work in this very presentation.

      Cambridge 2010

      Excellent defense!

      Washington 2011

  • Peking Peking