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Team:Evry/FrenchFrog
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| + | <center><h1><b>Xenopus tropicalis: A new chassis for multicellular synthetic biology</b></h1></center> | ||
| - | < | + | <h2>Establishment of a new chassis</b></h2><br/> |
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| - | <p> | + | <p>So far, synthetic biology has mostly focused on bacteria, since they are simple to engineer. iGEM teams and laboratories have worked on unicellular organisms in order to understand the underlying biology and have developed an impressive database of molecular parts. Some work has also been done on engineering mammalian cells and a few iGEM teams have followed this trend. Synthetic biologists are now imagining the rational design of multicellular organisms with numerous applications ranging from gene therapy or drug production to environmental monitoring. This year, our team would like to be part of that challenge.</p> |
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| - | < | + | <p>The arrival of <i>Xenopus</i> as a chassis in synthetic biology requires the creation of new standards and protocols that the community will be able to build on. We provided the registry with such tools that allow rapid construction and characterization of devices in vivo, and include debugging tools. We think they will be very useful for later iGEM teams and synthetic biologists who wish to work with <i>Xenopus</i> for building multicellular systems.</p> |
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| - | < | + | <p>You want to make the move from bacteria to multicellular synthetic biology ? Make sure you check out our Introduction to <i>Xenopus</i> page, and our Frogs for dummies page to make sure you are aware of all the differences between genetic engineering in eukaryotes.</p> |
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| - | < | + | <p>This year, the Evry iGEM team is going to be the one of the first iGEM team to work on a vertebrate. Our work is focused both on developing a system for intercellular and inter-tissue communication, and creating the tools for the iGEM community to easily express genes in specific tissues. We believe the tadpole is a chassis of choice for iGEM on multi cellular organisms, as experiments can be conducted in one week using microinjection methods. We hope to demonstrate the feasibility of engineering <i> Xenopus </i> in one summer for an iGEM project, and to create a great tool for multicellular synthetic biology: <a href="https://2012.igem.org/Team:Evry/AIDSystem">A synthetic, orthogonal hormonal system.</a> </p><br/> |
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| - | < | + | <h2>The simple molecular strategy to build eukaryotic plasmid ready to use: </h2> |
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| - | </ | + | <a href="https://static.igem.org/mediawiki/2012/0/0e/French_froggies_scheme2.1.png" target="_blank"> |
| + | <img src="https://static.igem.org/mediawiki/2012/0/0e/French_froggies_scheme2.1.png" alt="Image unavailable" width="950px" /> </a> | ||
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| - | + | <h2>Example of GFP expression in Xenopus</h2><br/> | |
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| - | < | + | <p>The <a href="https://2012.igem.org/Team:Evry/InjectionTuto">injection tutorial</a> explains very simply with diagram how we did injection and how take care about your embryos and tadpole. The experiment carries on 5 days, from the unfertilized egg to a swimming tadpole at <a href="https://2012.igem.org/Team:Evry/Stages">stage 48-50</a>. The GFP (or other fluorescent protein) is expressed few hours after the fertilization to the end of the week (see below). |
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| - | < | + | <h3>Plasmid injected: pCS2+ with CMV promoter and GFP-aid reporter</h3><br/> |
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| - | + | <p>We injected 2.3 nl of plasmids at 100ng.µl-1 - embryos were stored at 21°C during all the experiment. pCS2+ GFP-aid: contains the constitutive and ubiquitous promoter CMV and the aid sequenced of the aid system fusionned to GFP (Green Fluorescent Protein)(Nishimura et al., 2009), this Biobrick created by our team is <a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K812010">BBa_K812010</a>, and it was integrated into our Eucaryotic plasmid <a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K812000">BBa_K812000</a>.We injected about 3.78E+7 plasmids.</p><br/> | |
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| - | + | <h4><b>The characterization of all reporter and promoters is <u><a href="https://2012.igem.org/Team:Evry/Tadpole_injection1">here</a></u>.</b></h4><br> | |
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| - | + | <h2>Conclusion</h2><br/> | |
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| - | + | <p>We showed that our constructions express our reporters with the CMV promoter. These parts are considered characterized. Nevertheless we expected a more uniform expression of the reporters with the CMV promoter. Spectral variants of fluorescent proteins could be expressed in different tissues. Within one tadpole the fluorescent proteins were observed in one to four different tissues, and tissues were different between tadpoles.</P> | |
| - | + | <P>Explanation: The plasmid DNA does not diffuse in the egg and stay in the same area around the injection site. This means that depending on the injection site, the plasmid will be inherited by a given set of cells within the tadpole. This question was raised in our <a href="https://2012.igem.org/Team:Evry/plasmid_splitting">model</a>. An other reason could be that the metabolism of each tissue specific cell is different and change during the tadpole's development.</P> | |
| + | <P>Moreover the expression of reporters decreases during time, because plasmid DNA is subjected to a catabolic activity during development but also plasmid DNA gets diluted as cells proliferate and the quantity of plasmid DNA decreases for each cell.</p><br> | ||
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| + | <p id="references">References:</p> | ||
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| + | <li><i>Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines.</i>, Chae J., Zimmerman L.B., Grainger R.M., Mechanisms of development 117:1-2, 2002</li> | ||
| + | <li><i>Xenopus: a prince among models for pronephric kidney development.</i>, Jones E., JASN 16:2, 2005</li> | ||
| - | + | <li><i>An auxin-based degron system for the rapid depletion of proteins in nonplant cells</i>, Nishimura K., Fukagawa T., Takisawa H., Kakimoto T., Kanemaki M., Nature Methods 6:12, 2009</li> | |
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Revision as of 20:28, 25 September 2012
Xenopus tropicalis: A new chassis for multicellular synthetic biology
Establishment of a new chassis
So far, synthetic biology has mostly focused on bacteria, since they are simple to engineer. iGEM teams and laboratories have worked on unicellular organisms in order to understand the underlying biology and have developed an impressive database of molecular parts. Some work has also been done on engineering mammalian cells and a few iGEM teams have followed this trend. Synthetic biologists are now imagining the rational design of multicellular organisms with numerous applications ranging from gene therapy or drug production to environmental monitoring. This year, our team would like to be part of that challenge.
The arrival of Xenopus as a chassis in synthetic biology requires the creation of new standards and protocols that the community will be able to build on. We provided the registry with such tools that allow rapid construction and characterization of devices in vivo, and include debugging tools. We think they will be very useful for later iGEM teams and synthetic biologists who wish to work with Xenopus for building multicellular systems.
You want to make the move from bacteria to multicellular synthetic biology ? Make sure you check out our Introduction to Xenopus page, and our Frogs for dummies page to make sure you are aware of all the differences between genetic engineering in eukaryotes.
This year, the Evry iGEM team is going to be the one of the first iGEM team to work on a vertebrate. Our work is focused both on developing a system for intercellular and inter-tissue communication, and creating the tools for the iGEM community to easily express genes in specific tissues. We believe the tadpole is a chassis of choice for iGEM on multi cellular organisms, as experiments can be conducted in one week using microinjection methods. We hope to demonstrate the feasibility of engineering Xenopus in one summer for an iGEM project, and to create a great tool for multicellular synthetic biology: A synthetic, orthogonal hormonal system.
The simple molecular strategy to build eukaryotic plasmid ready to use:
Example of GFP expression in Xenopus
The injection tutorial explains very simply with diagram how we did injection and how take care about your embryos and tadpole. The experiment carries on 5 days, from the unfertilized egg to a swimming tadpole at stage 48-50. The GFP (or other fluorescent protein) is expressed few hours after the fertilization to the end of the week (see below).
Plasmid injected: pCS2+ with CMV promoter and GFP-aid reporter
We injected 2.3 nl of plasmids at 100ng.µl-1 - embryos were stored at 21°C during all the experiment. pCS2+ GFP-aid: contains the constitutive and ubiquitous promoter CMV and the aid sequenced of the aid system fusionned to GFP (Green Fluorescent Protein)(Nishimura et al., 2009), this Biobrick created by our team is BBa_K812010, and it was integrated into our Eucaryotic plasmid BBa_K812000.We injected about 3.78E+7 plasmids.
The characterization of all reporter and promoters is here.
Conclusion
We showed that our constructions express our reporters with the CMV promoter. These parts are considered characterized. Nevertheless we expected a more uniform expression of the reporters with the CMV promoter. Spectral variants of fluorescent proteins could be expressed in different tissues. Within one tadpole the fluorescent proteins were observed in one to four different tissues, and tissues were different between tadpoles.
Explanation: The plasmid DNA does not diffuse in the egg and stay in the same area around the injection site. This means that depending on the injection site, the plasmid will be inherited by a given set of cells within the tadpole. This question was raised in our model. An other reason could be that the metabolism of each tissue specific cell is different and change during the tadpole's development.
Moreover the expression of reporters decreases during time, because plasmid DNA is subjected to a catabolic activity during development but also plasmid DNA gets diluted as cells proliferate and the quantity of plasmid DNA decreases for each cell.
References:
- Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines., Chae J., Zimmerman L.B., Grainger R.M., Mechanisms of development 117:1-2, 2002
- Xenopus: a prince among models for pronephric kidney development., Jones E., JASN 16:2, 2005
- An auxin-based degron system for the rapid depletion of proteins in nonplant cells, Nishimura K., Fukagawa T., Takisawa H., Kakimoto T., Kanemaki M., Nature Methods 6:12, 2009
