Team:TU Darmstadt/Project/Metabolism/Materials
From 2012.igem.org
(Difference between revisions)
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<span style="font-size:200%;"><span style="color:#00689D;">Materials</span></span> | <span style="font-size:200%;"><span style="color:#00689D;">Materials</span></span> | ||
+ | |||
+ | |||
+ | ==Primer== | ||
+ | |||
+ | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
+ | |- style="font-size:11pt;font-weight:bold" align="center" valign="bottom" | ||
+ | | width="22" height="15" | No. | ||
+ | | width="89" | Name | ||
+ | | width="422" | 5´-->3´ | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 1 | ||
+ | | tphA2-l-F | ||
+ | | TCATGCTTGCATCTCCTGTC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 2 | ||
+ | | tphA2-l-Prefix | ||
+ | | GAATTCGCGGCCGCTTCTAGATGCAAGAATCCATCATCCAGTGGC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 3 | ||
+ | | tphA1-Suffix_R | ||
+ | | CTGCAGCGGCCGCTACTAGTACTAATGGTTGCCAGTCGGGTCTG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 4 | ||
+ | | tphA3-Suffix_R | ||
+ | | CTGCAGCGGCCGCTACTAGTATCATAGCGGCAATGACATCAGCGTG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 5 | ||
+ | | tphA3-Prefix_F | ||
+ | | GAATTCGCGGCCGCTTCTAGATGATCCATGAAATTCAAATCGCGG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 6 | ||
+ | | tphA1-l-R | ||
+ | | CTAATGGTTGCCAGTCGGGT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 7 | ||
+ | | tphA1-l-PstI(99)-F | ||
+ | | CATGGTCTCCTCCAGGCCGGCATCGAGCT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 8 | ||
+ | | tphA1-l-Prefix | ||
+ | | GAATTCGCGGCCGCTTCTAGATGAACCACCAGATCCATATCCACG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 9 | ||
+ | | tphA3-l-F | ||
+ | | TCATAGCGGCAATGACATCA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 10 | ||
+ | | tphA3-l-Prefix | ||
+ | | GAATTCGCGGCCGCTTCTAGAGATGATCCATGAAATTCAAATCGC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 11 | ||
+ | | Prefix | ||
+ | | GAATTCGCGGCCGCTTCTAGAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 12 | ||
+ | | tphB-l-F | ||
+ | | TCAGACCGGTTGGGCTCCGA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 13 | ||
+ | | tphB-l-Prefix | ||
+ | | GAATTCGCGGCCGCTTCTAGAGATGACAATAGTGCACCGTAGATT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 14 | ||
+ | | tphA2-l-R | ||
+ | | ATGCAAGAATCCATCATCCAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 15 | ||
+ | | tphA1-l-R | ||
+ | | ATGAACCACCAGATCCATATC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 16 | ||
+ | | tphA1-l-PstI(99)-R | ||
+ | | CATGGTCTCCTGGAGGGCTGCATCCAGTAC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 17 | ||
+ | | tphA3-l-R | ||
+ | | ATGATCCATGAAATTCAAAT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 18 | ||
+ | | Suffix | ||
+ | | CTGCAGCGGCCGCTACTAGTA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 19 | ||
+ | | tphB-l-Suffix-R | ||
+ | | CTGCAGCGGCCGCTACTAGTATCAGACCGGTTGGGCTCCGAGTA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 20 | ||
+ | | EcoRIGFxa-tphA1 | ||
+ | | TTCTGGAATTCGGGTATTGAAGGAAGAATGAACCACCAGATCCATAT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 21 | ||
+ | | EcoRIGFxa-tphA2 | ||
+ | | TTCTGGAATTCGGGTATTGAAGGAAGAATGCAAGAATCCATCATCCA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 22 | ||
+ | | EcoRIGFxa-tphA3 | ||
+ | | TTCTGGAATTCGGGTATTGAAGGAAGAATGATCCATGAAATTCAAAT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 23 | ||
+ | | EcoRIGFxa-tphB | ||
+ | | TTCTGGAATTCGGGTATTGAAGGAAGAATGACAATAGTGCACCGTAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 24 | ||
+ | | EcoRIGFxa-aroY | ||
+ | | TTCTGGAATTCGGGTATTGAAGGAAGAATGACAGCGCCTATCCAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 25 | ||
+ | | RBS-tphA1 | ||
+ | | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGAACCACCAGATCCATAT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 26 | ||
+ | | RBS-tphA2 | ||
+ | | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGCAAGAATCCATCATCCA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 27 | ||
+ | | RBS-tphA3 | ||
+ | | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGATCCATGAAATTCAAAT | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 28 | ||
+ | | RBS-tphB | ||
+ | | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGACAATAGTGCACCGTAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 29 | ||
+ | | RBS-aroY | ||
+ | | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGACAGCGCCTATCCAG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 30 | ||
+ | | VF2 | ||
+ | | TGCCACCTGACGTCTAAGAA | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 31 | ||
+ | | VR | ||
+ | | ATTACCGCCTTTGAGTGAGC | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 32 | ||
+ | | pPR-IBA2 rev | ||
+ | | TAGTTATTGCTCAGCGGTGG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" valign="bottom" | ||
+ | |style="font-weight:bold" align="center" height="15" | 33 | ||
+ | | pPR-IBA2 for | ||
+ | | TAATACGACTCACTATAGGG | ||
+ | |||
+ | |} | ||
+ | |||
+ | ==Plasmids== | ||
+ | |||
+ | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
+ | |- style="font-size:11pt;font-weight:bold" align="center" | ||
+ | | width="60" height="15" | No. | ||
+ | | width="60" | Name | ||
+ | | width="60" | Sequence | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold" align="center" height="15" | 1 | ||
+ | | pSB1C3 | ||
+ | |style="text-decoration:underline;color:#0000FF" | [http://partsregistry.org/Part:pSB1C3 Get] | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold;text-decoration:none" align="center" height="15" | 2 | ||
+ | | pSB1AK3 | ||
+ | |style="text-decoration:underline;color:#0000FF" | [http://partsregistry.org/Part:pSB1AK3 Get] | ||
+ | |||
+ | |- align="center" | ||
+ | |style="font-size:11pt;font-weight:bold;text-decoration:none" align="center" height="15" | 3 | ||
+ | | BBa_J61002 | ||
+ | |style="font-size:11pt;text-decoration:underline;color:#0000FF" | [http://partsregistry.org/Part:BBa_J61002 Get] | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold;text-decoration:none" align="center" height="15" | 4 | ||
+ | | pSB1A2 | ||
+ | |style="text-decoration:underline;color:#0000FF" | [http://partsregistry.org/Part:pSB1A2 Get] | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold;text-decoration:none" align="center" height="15" | 5 | ||
+ | | pPR-IBA2 | ||
+ | |style="text-decoration:underline;color:#0000FF" | [http://www.iba-lifesciences.com/isotope/2/2-1391-000-Sequence-pPR-IBA2.txt Get] | ||
+ | |||
+ | |} | ||
+ | |||
+ | ==Biobricks from the registry== | ||
+ | |||
+ | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
+ | |- style="font-size:11pt;font-weight:bold" align="center" | ||
+ | | width="60" height="15" | No. | ||
+ | | width="65" | Name | ||
+ | | width="60" | Platte | ||
+ | | width="60" | Well | ||
+ | | width="60" | Resistence | ||
+ | | width="90" | Plasmid backbone | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold" align="center" height="15" | 1 | ||
+ | | BBa_K316003 | ||
+ | | align="center" | 4 | ||
+ | | 15C | ||
+ | | C | ||
+ | | pSB1C3 | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold" align="center" height="15" | 2 | ||
+ | | BBa_J23100 | ||
+ | | align="center" | 1 | ||
+ | | 18C | ||
+ | | A | ||
+ | | BBa_J61002 | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold" align="center" height="15" | 3 | ||
+ | | BBa_B0015 | ||
+ | | align="center" | 1 | ||
+ | | 23L | ||
+ | | A und K | ||
+ | | pSB1AK3 | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | |style="font-weight:bold" align="center" height="15" | 4 | ||
+ | | BBa_J61101 | ||
+ | | align="center" | 1 | ||
+ | | 5L | ||
+ | | A | ||
+ | | pSB1A2 | ||
+ | |||
+ | |} | ||
+ | |||
+ | |||
+ | ==Bacteria== | ||
+ | |||
+ | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
+ | |- style="font-size:11pt;font-weight:bold" align="center" | ||
+ | | width="180" height="30" | Species | ||
+ | | width="76" | Strain | ||
+ | | width="501" | Genotype | ||
+ | | width="46" | DSM-No. | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="22" | Escherichia coli | ||
+ | | DH5α | ||
+ | | F- endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169, hsdR17(rK- mK+), λ– | ||
+ | | 6897 | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="17" | Escherichia coli | ||
+ | | MG1655 | ||
+ | | F- λ- ilvG- rfb-50 rph-1 | ||
+ | | 18039 | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="19" | Escherichia coli | ||
+ | | BL21(DE3)pLysS | ||
+ | | F- ompT gal dcm lon hsdSB(rB- mB-) λ(DE3) pLysS(cmR) | ||
+ | | none | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Comamonas testosteroni | ||
+ | | Kf-1 | ||
+ | | - | ||
+ | | 14576 | ||
+ | |||
+ | |} | ||
+ | |||
+ | ==Enzymes== | ||
+ | |||
+ | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
+ | |- style="font-size:11pt;font-weight:bold" align="center" | ||
+ | | width="256" height="15" | Enzyme | ||
+ | | width="51" | Supplier | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Antarctic Phosphatase | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | BsaI | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | EcoRI-HF | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Phusion® High-Fidelity DNA Polymerase | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | PstI-HF | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | SpeI-HF | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | T4 DNA Ligase | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Taq DNA Polymerase with ThermoPol Buffer | ||
+ | | NEB | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | XbaI | ||
+ | | NEB | ||
+ | |||
+ | |} | ||
==Chemicals== | ==Chemicals== | ||
Line 431: | Line 768: | ||
|} | |} | ||
- | == | + | |
+ | ==Kits== | ||
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> | ||
- | |- style="font-size:11pt;font-weight:bold" align="center | + | |- style="font-size:11pt;font-weight:bold" align="center" |
- | | width=" | + | | width="256" height="15" | Kit |
- | + | | width="51" | Supplier | |
- | | width=" | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | PureYield™ Plasmid Miniprep System |
- | + | | Promega | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | PureYield™ Plasmid Midiprep System |
- | + | | Promega | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Wizard® SV Gel and PCR Clean-Up System |
- | + | | Promega | |
- | | | + | |
- | | | + | |} |
- | + | ||
- | + | ||
- | + | ||
- | + | ==Consumabels== | |
- | + | ||
- | + | ||
- | + | ||
- | |- style="font-size:11pt | + | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> |
- | + | |- style="font-size:11pt;font-weight:bold" align="center" | |
- | + | | width="250" height="15" | Article | |
- | + | | width="142" | Supplier | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Box pipette tips 0.1–20 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Box pipette tips 10–200 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Box pipette tips 100–1000 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Bulk pipette tips 0.1–20 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Bulk pipette tips 10–200 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | epT.I.P.S.® Bulk pipette tips 100–1000 µL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | PCR Tubes 0.2 mL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | PCR Tube Strips 0.2 mL |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Safe-Lock Tubes (1.5 mL) |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Safe-Lock Tubes (2 mL) |
- | + | | Eppendorf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Rotilabo®-syringe filters |
- | + | | Carl Roth GmbH | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | NORM-Ject Syringes |
- | + | | Henke/Sass/Wolf | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Multiply®-PCR-tubes 0.2 mL |
- | + | | Sarstedt | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | VWR® Pipet Tips (Standard Tips, 0.1–20 µL) |
- | + | | VWR | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | VWR® Pipet Tips (Standard Tips, 10–200 µL) |
- | + | | VWR | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | VWR® Pipet Tips (Standard Tips, 100-1000 µL) |
- | + | | VWR | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | VWR® Powder-Free Nitrile Examination Gloves |
- | + | | VWR | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Eco-friendly centrifuge tubes (15 mL, unsterile) |
- | + | | Carl Roth GmbH | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | 50 mL Centrifuge tubes, sterile |
- | | | + | | Greiner bio-one |
- | + | ||
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Sekuroka®-disposal bags |
- | + | | Carl Roth GmbH | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Rotiprotect®-nitrile gloves, unpowdered |
- | + | | Carl Roth GmbH | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | UV-cuvettes PLASTIBRAND® (Micro z = 8,5 mm) |
- | + | | Brand GmbH & Co. KG | |
- | | | + | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Parafilm® M |
- | + | | Pechiney Plastic Packaging | |
- | | | + | |
- | | | + | |} |
- | + | ||
- | + | ||
- | + | ||
- | + | ==Equipment== | |
- | + | ||
- | + | ||
- | + | ||
- | |- style="font-size:11pt | + | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8<\hiddentext> |
- | + | |- style="font-size:11pt;font-weight:bold" align="center" | |
- | + | | width="250" height="15" | Equipment | |
- | + | | width="154" | Supplier | |
- | |- style="font-size:11pt" align="center | + | |- style="font-size:11pt" align="center" |
- | | | + | | height="15" | Mastercycler personal (Thermocycler) |
- | + | | Eppendorf | |
- | | | + | |
- | | | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Heraeus Pico Microcentrifuge | ||
+ | | Thermo Scientific | ||
- | == | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Multifuge® 1S-R | ||
+ | | Thermo Scientific | ||
- | + | |- style="font-size:11pt" align="center" | |
- | |- style="font-size:11pt | + | | height="15" | VX-150 Autoclave |
- | | | + | | Systec |
- | | | + | |
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="15" | Uni-Drybath Thermoshaker |
- | | | + | | Universal Labortechnik |
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="15" | Vortex Genie 2 |
- | | | + | | Scientific Industries |
- | + | ||
- | |- | + | |- style="font-size:11pt" align="center" |
- | + | | height="15" | Universal Centrifuge | |
- | | | + | | Sigma Laborzentrifugen |
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="15" | Dark Hood DH-40 with control panel and display |
- | | | + | | Biostep |
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="30" | BioMate 3S Spectrophotometer |
- | | | + | | Thermo Scientific |
- | + | ||
- | | | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | GENESYS 10S UV-Vis | ||
+ | | Thermo Scientific | ||
- | == | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Heraeus LaminAir HA 2448 GS | ||
+ | | Heraeus | ||
- | + | |- style="font-size:11pt" align="center" | |
- | |- style="font-size:11pt | + | | height="30" | Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 10 µL |
- | | | + | | VWR |
- | | | + | |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="30" | Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 100 µL |
- | + | | VWR | |
- | + | ||
- | + | ||
- | + | ||
- | | | + | |
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="30" | Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 1000 µL |
- | + | | VWR | |
- | + | ||
- | + | ||
- | + | ||
- | | | + | |
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="15" | Research® plus, adjustable pipette 0.5 - 10 µL |
- | + | | Eppendorf | |
- | + | ||
- | + | ||
- | + | ||
- | | | + | |
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | | + | | height="15" | Research® plus, adjustable pipette 10 - 100 µL |
- | + | | Eppendorf | |
- | + | ||
- | + | ||
- | + | ||
- | | | + | |
- | | | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Research® plus, adjustable pipette 100 – 1000 µL | ||
+ | | Eppendorf | ||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Research® plus, adjustable pipette 10 - 200 µL | ||
+ | | Eppendorf | ||
- | == | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Research® plus, adjustable pipette 0.5 - 20 µL | ||
+ | | Eppendorf | ||
- | + | |- style="font-size:11pt" align="center" | |
- | |- style="font-size:11pt | + | | height="15" | Reference, adjustable pipette 0.5 – 10 µL |
- | | | + | | Eppendorf |
- | | | + | |
- | + | ||
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | height=" | + | | height="15" | M-Prove Balances |
- | | | + | | Sartorius |
- | + | ||
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | height=" | + | | height="15" | M-Power Balances |
- | | | + | | Sartorius |
- | + | ||
- | + | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | height=" | + | | height="15" | Owl Series EasyCast™ Horizontal Mini-Gel Systems |
- | | | + | | VWR |
- | + | ||
- | | | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Owl Series Horizontal Gel Systems | ||
+ | | VWR | ||
|- style="font-size:11pt" align="center" | |- style="font-size:11pt" align="center" | ||
- | | height="15" | | + | | height="15" | Owl Series Dual Gel Vertical Electrophoresis System |
- | | | + | | VWR |
- | | - | + | |
- | | | + | |- style="font-size:11pt" align="center" |
+ | | height="15" | Power Supplies 250V | ||
+ | | VWR | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Incubation/Inactivation Water Bath 1008 | ||
+ | | Gesellschaft für Labortechnik | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | Lab-Shaker LSR-V | ||
+ | | Adolf Kühner AG | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | MR Hei-Mix S | ||
+ | | Heidolph | ||
+ | |||
+ | |- style="font-size:11pt" align="center" | ||
+ | | height="15" | FE20 – FiveEasy™ pH | ||
+ | | Mettler Toledo | ||
|} | |} |
Revision as of 10:46, 23 September 2012
Materials
Contents |
Primer
No. | Name | 5´-->3´ |
1 | tphA2-l-F | TCATGCTTGCATCTCCTGTC |
2 | tphA2-l-Prefix | GAATTCGCGGCCGCTTCTAGATGCAAGAATCCATCATCCAGTGGC |
3 | tphA1-Suffix_R | CTGCAGCGGCCGCTACTAGTACTAATGGTTGCCAGTCGGGTCTG |
4 | tphA3-Suffix_R | CTGCAGCGGCCGCTACTAGTATCATAGCGGCAATGACATCAGCGTG |
5 | tphA3-Prefix_F | GAATTCGCGGCCGCTTCTAGATGATCCATGAAATTCAAATCGCGG |
6 | tphA1-l-R | CTAATGGTTGCCAGTCGGGT |
7 | tphA1-l-PstI(99)-F | CATGGTCTCCTCCAGGCCGGCATCGAGCT |
8 | tphA1-l-Prefix | GAATTCGCGGCCGCTTCTAGATGAACCACCAGATCCATATCCACG |
9 | tphA3-l-F | TCATAGCGGCAATGACATCA |
10 | tphA3-l-Prefix | GAATTCGCGGCCGCTTCTAGAGATGATCCATGAAATTCAAATCGC |
11 | Prefix | GAATTCGCGGCCGCTTCTAGAG |
12 | tphB-l-F | TCAGACCGGTTGGGCTCCGA |
13 | tphB-l-Prefix | GAATTCGCGGCCGCTTCTAGAGATGACAATAGTGCACCGTAGATT |
14 | tphA2-l-R | ATGCAAGAATCCATCATCCAG |
15 | tphA1-l-R | ATGAACCACCAGATCCATATC |
16 | tphA1-l-PstI(99)-R | CATGGTCTCCTGGAGGGCTGCATCCAGTAC |
17 | tphA3-l-R | ATGATCCATGAAATTCAAAT |
18 | Suffix | CTGCAGCGGCCGCTACTAGTA |
19 | tphB-l-Suffix-R | CTGCAGCGGCCGCTACTAGTATCAGACCGGTTGGGCTCCGAGTA |
20 | EcoRIGFxa-tphA1 | TTCTGGAATTCGGGTATTGAAGGAAGAATGAACCACCAGATCCATAT |
21 | EcoRIGFxa-tphA2 | TTCTGGAATTCGGGTATTGAAGGAAGAATGCAAGAATCCATCATCCA |
22 | EcoRIGFxa-tphA3 | TTCTGGAATTCGGGTATTGAAGGAAGAATGATCCATGAAATTCAAAT |
23 | EcoRIGFxa-tphB | TTCTGGAATTCGGGTATTGAAGGAAGAATGACAATAGTGCACCGTAG |
24 | EcoRIGFxa-aroY | TTCTGGAATTCGGGTATTGAAGGAAGAATGACAGCGCCTATCCAG |
25 | RBS-tphA1 | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGAACCACCAGATCCATAT |
26 | RBS-tphA2 | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGCAAGAATCCATCATCCA |
27 | RBS-tphA3 | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGATCCATGAAATTCAAAT |
28 | RBS-tphB | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGACAATAGTGCACCGTAG |
29 | RBS-aroY | TTCTGGAATTCGCGGCCGCTTCTAGAGAAAGACAGGACCTACTAGATGACAGCGCCTATCCAG |
30 | VF2 | TGCCACCTGACGTCTAAGAA |
31 | VR | ATTACCGCCTTTGAGTGAGC |
32 | pPR-IBA2 rev | TAGTTATTGCTCAGCGGTGG |
33 | pPR-IBA2 for | TAATACGACTCACTATAGGG |
Plasmids
No. | Name | Sequence |
1 | pSB1C3 | [http://partsregistry.org/Part:pSB1C3 Get] |
2 | pSB1AK3 | [http://partsregistry.org/Part:pSB1AK3 Get] |
3 | BBa_J61002 | [http://partsregistry.org/Part:BBa_J61002 Get] |
4 | pSB1A2 | [http://partsregistry.org/Part:pSB1A2 Get] |
5 | pPR-IBA2 | [http://www.iba-lifesciences.com/isotope/2/2-1391-000-Sequence-pPR-IBA2.txt Get] |
Biobricks from the registry
No. | Name | Platte | Well | Resistence | Plasmid backbone |
1 | BBa_K316003 | 4 | 15C | C | pSB1C3 |
2 | BBa_J23100 | 1 | 18C | A | BBa_J61002 |
3 | BBa_B0015 | 1 | 23L | A und K | pSB1AK3 |
4 | BBa_J61101 | 1 | 5L | A | pSB1A2 |
Bacteria
Species | Strain | Genotype | DSM-No. |
Escherichia coli | DH5α | F- endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169, hsdR17(rK- mK+), λ– | 6897 |
Escherichia coli | MG1655 | F- λ- ilvG- rfb-50 rph-1 | 18039 |
Escherichia coli | BL21(DE3)pLysS | F- ompT gal dcm lon hsdSB(rB- mB-) λ(DE3) pLysS(cmR) | none |
Comamonas testosteroni | Kf-1 | - | 14576 |
Enzymes
Enzyme | Supplier |
Antarctic Phosphatase | NEB |
BsaI | NEB |
EcoRI-HF | NEB |
Phusion® High-Fidelity DNA Polymerase | NEB |
PstI-HF | NEB |
SpeI-HF | NEB |
T4 DNA Ligase | NEB |
Taq DNA Polymerase with ThermoPol Buffer | NEB |
XbaI | NEB |
Chemicals
No. | Name | Firma | Order-ID |
1 | Terephthalat | Sigma-Aldrich | 185361-500G |
2 | Acetic acid | Roth | 6755.1 |
3 | Methanol | Roth | CP43.1 |
4 | Coomassie Brilliant Blue R-250 | Roth | 9598.1 |
5 | Trypton | Roth | 8952.1 |
6 | Ethylene glycol | Roth | 9516.1 |
7 | 3,4-Dihydroxybenzoic acid | Sigma-Aldrich | 37580-25G-F |
8 | Catechol | Sigma-Aldrich | C9510-100G |
9 | Isopropyl β-D-1-thiogalactopyranoside | Roth | CN08.1 |
10 | Tetramethylethylenediamine | Roth | 2367.3 |
11 | Ammonium persulfate | Roth | 9592.3 |
12 | Bromophenol blue | Roth | A512.1 |
13 | Glucose | Roth | X997.1 |
14 | Calcium chloride | Roth | CN92.1 |
15 | Dithiothreitol | Roth | 6908.1 |
16 | Sodium carbonate | Roth | 8563.1 |
17 | Phenylmethanesulfonylfluoride | Roth | 6367.1 |
18 | NADH-Disodium | Roth | AE12.1 |
19 | Nicotinamide adenine dinucleotide | Roth | AE11.1 |
20 | orthophosphoric acid 85% | Roth | 9079.1 |
21 | Trichloroacetic acid | Roth | 8789.2 |
22 | Quick-Load® 100 bp DNA Ladder | NEB Biolabs | N0467S |
23 | Phenol | AppliChem | A4458.0250 |
24 | Dimethyl sulfoxide | AppliChem | A1584.0100 |
25 | Methylene blue | AppliChem | A4084.0025 |
26 | Magnesium sulfate | AppliChem | A6287.0250 |
27 | Cetrimonium bromide | AppliChem | A0805.0100 |
28 | Tetramethylethylenediamine | AppliChem | A1148.0025 |
29 | Urea | AppliChem | A5470.0500 |
30 | Tween20 | AppliChem | A1389.0500 |
31 | Protein Marker III (6,5-200) | AppliChem | A4402.0001 |
32 | Thiamine hydrochloride | AppliChem | A09955.0050 |
33 | Triton X-100 | AppliChem | A1388.0500 |
34 | DNA-Dye NonTox | AppliChem | A9555.1000 |
35 | Agarose | Roth | 3810.2 |
36 | Ethanol 96 % | Roth | T171.4 |
37 | Ethylenediaminetetraacetic acid | Roth | X986.2 |
38 | Ethanol | Roth | P076.1 |
39 | Tetracycline hydrochloride | Roth | 237.1 |
40 | D-Desthiobiotin 10x Buffer E | iba | 2-1000-025 |
41 | 2-(4-Hydroxyphenylazo)benzoic acid | Sigma-Aldrich | H5126-5G |
42 | 10 mM dNTP-Mix | Roth | L785.2 |
43 | Hydrochloric acid | Roth | 9277.1 |
44 | Acrylamid - Bis (37,5:1) | Roth | 3029.1 |
45 | Ammonium acetate | Roth | 7869.2 |
46 | Agar-Agar | Roth | 5210.3 |
47 | Chloroform | Roth | 4423.1 |
48 | Glycine | Roth | 3790.2 |
49 | Dipotassium phosphate | Roth | T875.1 |
50 | Sodium chloride | Roth | 9265.1 |
51 | Yeast extract | Roth | 2363.2 |
52 | Monopotassium phosphate | Roth | P018.1 |
53 | Glycerine | Roth | 3783.1 |
54 | Sodium hydroxide | Roth | P031.1 |
55 | Tris-Base | Roth | AE15.2 |
56 | Isopropyl alcohol | Roth | CP41.3 |
57 | Isoamyl alcohol | Roth | T870.1 |
58 | Acetonitrile | Roth | 7330.2 |
59 | Acetone | Roth | 5025.5 |
60 | Chloramphenicol | Roth | 3886.2 |
61 | Ampicillin | Roth | K029.1 |
62 | Kanamycin | Roth | T832.1 |
63 | Sodium dodecyl sulfate | Roth | 5136.1 |
Kits
Kit | Supplier |
PureYield™ Plasmid Miniprep System | Promega |
PureYield™ Plasmid Midiprep System | Promega |
Wizard® SV Gel and PCR Clean-Up System | Promega |
Consumabels
Article | Supplier |
epT.I.P.S.® Box pipette tips 0.1–20 µL | Eppendorf |
epT.I.P.S.® Box pipette tips 10–200 µL | Eppendorf |
epT.I.P.S.® Box pipette tips 100–1000 µL | Eppendorf |
epT.I.P.S.® Bulk pipette tips 0.1–20 µL | Eppendorf |
epT.I.P.S.® Bulk pipette tips 10–200 µL | Eppendorf |
epT.I.P.S.® Bulk pipette tips 100–1000 µL | Eppendorf |
PCR Tubes 0.2 mL | Eppendorf |
PCR Tube Strips 0.2 mL | Eppendorf |
Safe-Lock Tubes (1.5 mL) | Eppendorf |
Safe-Lock Tubes (2 mL) | Eppendorf |
Rotilabo®-syringe filters | Carl Roth GmbH |
NORM-Ject Syringes | Henke/Sass/Wolf |
Multiply®-PCR-tubes 0.2 mL | Sarstedt |
VWR® Pipet Tips (Standard Tips, 0.1–20 µL) | VWR |
VWR® Pipet Tips (Standard Tips, 10–200 µL) | VWR |
VWR® Pipet Tips (Standard Tips, 100-1000 µL) | VWR |
VWR® Powder-Free Nitrile Examination Gloves | VWR |
Eco-friendly centrifuge tubes (15 mL, unsterile) | Carl Roth GmbH |
50 mL Centrifuge tubes, sterile | Greiner bio-one |
Sekuroka®-disposal bags | Carl Roth GmbH |
Rotiprotect®-nitrile gloves, unpowdered | Carl Roth GmbH |
UV-cuvettes PLASTIBRAND® (Micro z = 8,5 mm) | Brand GmbH & Co. KG |
Parafilm® M | Pechiney Plastic Packaging |
Equipment
Equipment | Supplier |
Mastercycler personal (Thermocycler) | Eppendorf |
Heraeus Pico Microcentrifuge | Thermo Scientific |
Multifuge® 1S-R | Thermo Scientific |
VX-150 Autoclave | Systec |
Uni-Drybath Thermoshaker | Universal Labortechnik |
Vortex Genie 2 | Scientific Industries |
Universal Centrifuge | Sigma Laborzentrifugen |
Dark Hood DH-40 with control panel and display | Biostep |
BioMate 3S Spectrophotometer | Thermo Scientific |
GENESYS 10S UV-Vis | Thermo Scientific |
Heraeus LaminAir HA 2448 GS | Heraeus |
Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 10 µL | VWR |
Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 100 µL | VWR |
Signature™ Ergonomic High Performance Single-Channel Variable Volume Pipettors 1000 µL | VWR |
Research® plus, adjustable pipette 0.5 - 10 µL | Eppendorf |
Research® plus, adjustable pipette 10 - 100 µL | Eppendorf |
Research® plus, adjustable pipette 100 – 1000 µL | Eppendorf |
Research® plus, adjustable pipette 10 - 200 µL | Eppendorf |
Research® plus, adjustable pipette 0.5 - 20 µL | Eppendorf |
Reference, adjustable pipette 0.5 – 10 µL | Eppendorf |
M-Prove Balances | Sartorius |
M-Power Balances | Sartorius |
Owl Series EasyCast™ Horizontal Mini-Gel Systems | VWR |
Owl Series Horizontal Gel Systems | VWR |
Owl Series Dual Gel Vertical Electrophoresis System | VWR |
Power Supplies 250V | VWR |
Incubation/Inactivation Water Bath 1008 | Gesellschaft für Labortechnik |
Lab-Shaker LSR-V | Adolf Kühner AG |
MR Hei-Mix S | Heidolph |
FE20 – FiveEasy™ pH | Mettler Toledo |