Team:Wageningen UR/Journal/week9

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{{Template:WUR}}
{{Template:WUR}}
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= week 9: 25 june - 29 june =
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= week 9: 25 june - 1 july =
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== Office work ==
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== Lab work ==
== Lab work ==
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'''General'''
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Biobrick BBa_B0015 (a terminator) was cloned.
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Cloning of BBa_J04500 (IPTG inducible promotor with RBS) and BBa_K197022/38 (Berkeley KILR coil)
 +
*BBa_J04500 was solubilized from the Standard registry parts plate I with 10µl MQ water
 +
*BBa_K197022/38 was ordered from the registry
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* transformation of ''E.coli'' with both plasmids
 +
*5 samples (due to variation of transformation protocol)
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*plated on LB-agar with corresponding antibiotic
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*5 colonies picked per plate and grown in 5 ml liquid LB overnight
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*subsequent miniprep and digestion check
 +
*electrophoresis gel showed the expected bands after 20 min running, unfortunately DNA got bleached later by UV light 
 +
3 glycerol stocks (25%) of samples 1,3 and 5 were made to test the protocol for freezing cells at 80°C and subsequent thawing and streaking out, which was done successfully the next day.
'''TuYV'''
'''TuYV'''
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Wednesday:
Wednesday:
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*Last week's PCR products were digested, ligated into the linearized pSB1A3 backbone and transformed into our electrocompetent DH5 Alfa cells.
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*Last week's PCR products(1,1H,2,2H,3,3H) were digested, ligated into the linearized pSB1A3 backbone and transformed into our electrocompetent DH5-alpha cells.
 +
 
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Then after transformation, we checked the colonies on the plate, but only few colonies on positive control and sample 1(TuYV coat protein), 1H(TuYV coat protein his-tag) and 2 plate (TuYV coat protein + 1/2 readthrough).
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Friday:
Friday:
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*A colony PCR was performed on the transformants. No positive results were acquired.
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*Colonies from 1, 1H and 2 plate were picked and checked by colony PCR. But no bands were showed later on the agrose gel check.  
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Written by: Han Yue
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'''CCMV'''
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*Colony PCR of all CCMV variants
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-Programme:
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  10 min 95 C
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  30 sec 95 C |
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  30 sec 60 C | x 35
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  1  min 72 C |
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  10 min 72 C
 +
  store at 4 C
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-PCR reaction mixture
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  2 ul  Buffer
 +
  0.4ul dNTPs
 +
  0.4ul FWD primer
 +
  0.4ul RVS primer
 +
  0.1ul Enzyme (taq)
 +
16.7ul H20
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*Ligated CCMV fragment into pJET for better digestion, transformed E.coli with the pJET fragment
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Written by: Wouter
 
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[[https://2012.igem.org/Team:Wageningen_UR/Journal/week8 previous week]]          [[https://2012.igem.org/Team:Wageningen_UR/Journal/week10 next week]]
[[https://2012.igem.org/Team:Wageningen_UR/Journal/week8 previous week]]          [[https://2012.igem.org/Team:Wageningen_UR/Journal/week10 next week]]

Latest revision as of 23:00, 26 September 2012

week 9: 25 june - 1 july

Lab work

General

Cloning of BBa_J04500 (IPTG inducible promotor with RBS) and BBa_K197022/38 (Berkeley KILR coil)

  • BBa_J04500 was solubilized from the Standard registry parts plate I with 10µl MQ water
  • BBa_K197022/38 was ordered from the registry
  • transformation of E.coli with both plasmids
  • 5 samples (due to variation of transformation protocol)
  • plated on LB-agar with corresponding antibiotic
  • 5 colonies picked per plate and grown in 5 ml liquid LB overnight
  • subsequent miniprep and digestion check
  • electrophoresis gel showed the expected bands after 20 min running, unfortunately DNA got bleached later by UV light

3 glycerol stocks (25%) of samples 1,3 and 5 were made to test the protocol for freezing cells at 80°C and subsequent thawing and streaking out, which was done successfully the next day.

TuYV

Wednesday:

  • Last week's PCR products(1,1H,2,2H,3,3H) were digested, ligated into the linearized pSB1A3 backbone and transformed into our electrocompetent DH5-alpha cells.

Then after transformation, we checked the colonies on the plate, but only few colonies on positive control and sample 1(TuYV coat protein), 1H(TuYV coat protein his-tag) and 2 plate (TuYV coat protein + 1/2 readthrough).


Friday:

  • Colonies from 1, 1H and 2 plate were picked and checked by colony PCR. But no bands were showed later on the agrose gel check.

Written by: Han Yue

CCMV

  • Colony PCR of all CCMV variants

-Programme: 

  10 min 95 C
  30 sec 95 C |
  30 sec 60 C | x 35
  1  min 72 C |
  10 min 72 C
  store at 4 C

-PCR reaction mixture 

 2 ul  Buffer
 0.4ul dNTPs
 0.4ul FWD primer
 0.4ul RVS primer
 0.1ul Enzyme (taq)
16.7ul H20
  • Ligated CCMV fragment into pJET for better digestion, transformed E.coli with the pJET fragment


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