Team:UTP-Software/Notebook

From 2012.igem.org

(Difference between revisions)
(Prototype team page)
(→PHASE III: Biofuel ToolKit)
 
(28 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
{{Team:UTP-Software/utptemplate2}}
-
<html>
+
== '''PHASE I: Recruitment and official campaign launch for UTP-Software Team 2012 '''==  
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
May 17th,2012
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
This day the Instructors Grimaldo Elias made the official campaign launching.
-
This is a template page. READ THESE INSTRUCTIONS.
+
-
</div>
+
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You <strong>MUST</strong>  have all of the pages listed in the menu below with the names specified.  PLEASE keep all of your pages within your teams namespace. 
+
-
</div>
+
-
</div>
+
-
</html>
+
-
<!-- *** End of the alert box *** -->
+
<div align="center">
 +
 
 +
<div align="justify">
 +
 
 +
<div align="justify">
 +
 
 +
<div align="center"><ul>
 +
 
 +
[[File:foto_poster_del_wiki.jpg]]
 +
<div align="center">
 +
This is our invitation Poster that we used on the Launching session at our Campus Lobby.
 +
===''' Meetings  & Launch''' ===
 +
<div align="justify">
 +
<br>
 +
 
 +
<div align="justify">
 +
<div align="center">
 +
[[File:Launch_1.jpg|450px]]
 +
<br>
 +
<br>
 +
[[File:Launch_2.jpg|450px]]
 +
<br>
 +
<br>
 +
[[File:Launch_3.jpg|450px]]
 +
<br>
 +
<br>
 +
[[File:Launch_4.jpg|450px]]
 +
 
 +
<br>
 +
 
 +
<div align="justify">
 +
<br>
 +
'''About Our Meetings and work in this Notebook'''<br>
 +
UTP-Software Team 2012, from the very beginning has been organizing meetings on academic period.
 +
We have worked a lot on weekends and after classes hours. General meetings were carried out regularly on Saturdays.
 +
<br>
 +
<div align="justify">
 +
 
 +
== ''' Synbio Training sessions:''' ==
 +
From '''May 18th until June 14th we developed the Workshops  and lectures  to Synthetic Biology'''.
 +
 
 +
Thematic Introductory Course in Synthetic Biology <br>
 +
a.    What is iGEM and synthetic biology?<br>
 +
b.    Molecules of Life and DNA Structure<br>
 +
c.    Central Dogma and information flow in biological systems<br>
 +
d.    Recombinant DNA Technology<br>
 +
e.    Introduction to Synthetic Biology and the BioBricks Standards<br>
 +
f.    Track Software iGEM competition<br>
 +
 
 +
== '''PHASE II. DEVELOPMENT PROJECT IDEAS ''' ==
 +
 
 +
From June to the month of July we developed many ideas and platforms about possible ideas and projects.
 +
From these meetings came the following ideas:<br>
 +
<ul>
 +
<li>Development of new tools for helping future iGEM teams.</li>
 +
<li>Development tool for engineering projects, we first found the most important area in order to apply it in our country.</li></ul>
 +
 
 +
<div align="justify">
 +
Development of a prototype software to read and extract information from the parts registry about the protocols standards and we show evidence of this project in the following image:
 +
 
 +
<br>
 +
<div align="center"><ul>
 +
[[File:Prototipo_21_de_julio.jpg|450px]]
 +
<br>
 +
 
 +
<div align="justify">
 +
<br>
 +
<br>
 +
 
 +
== ''' Choosing Projects ''' ==
 +
 
 +
'''July 2012'''
 +
<div align="justify">
 +
The UTP Team decided to develop new software for iGEM teams and individuals involved in Synbio.
 +
 
 +
I.  Mutagenesis study:<br>
 +
We proposed to study ways to automate site directed mutagenesis in our software program. Meanwhile another group of students of our team were studying and implementing the development of primers in this process.
 +
 
 +
II. We also began to develop an idea for a software that would help to develop projects related to energy production energy through biotechnology (biofuels). We chose the energy sector being both a national and global need, as our country uses mainly imported energy sources.
 +
</div>
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
=='''PHASE III: Biofuel ToolKit Project'''==
-
!align="center"|[[Team:UTP-Software|Home]]
+
-
!align="center"|[[Team:UTP-Software/Team|Team]]
+
-
!align="center"|[https://igem.org/Team.cgi?year=2012&team_name=UTP-Software Official Team Profile]
+
-
!align="center"|[[Team:UTP-Software/Project|Project]]
+
-
!align="center"|[[Team:UTP-Software/Parts|Parts Submitted to the Registry]]
+
-
!align="center"|[[Team:UTP-Software/Modeling|Modeling]]
+
-
!align="center"|[[Team:UTP-Software/Notebook|Notebook]]
+
-
!align="center"|[[Team:UTP-Software/Safety|Safety]]
+
-
!align="center"|[[Team:UTP-Software/Attributions|Attributions]]
+
-
|}
+
 +
'''August and September 2012'''<br>
 +
In the month of August we decided to finally continue with our iGEM Begineer's tools, at the same time that of develop a more professional Engineering tool.
 +
In this sense our team develop work to implementate differents aspects of Assembly Biobricks analysis and Site Direct Mutagenesis, in our project.
 +
On the other hand part of our team study and develop an strategy to implement SynBio standards Biobricks and Devices in a database.
 +
Since beginning of September we make a lot of running and corrections to our code and concepts to finally get our S<sup>2</sup>MT Software.
-
You should make use of the calendar feature on the wiki and start a lab notebook. This may be looked at by the judges to see how your work progressed throughout the summer. It is a very useful organizational tool as well.
+
About "Biosinergia Project", we met with staff of the International Center of Open Source Software Development (http://www.cidetys.org.pa/), where we established a collaboration to introduce ourselves in Grid Computing as solution for the implementation of Biosinergia Project.

Latest revision as of 04:07, 27 September 2012

DSCF7003.jpg
Home Team & Attributions Project S2MT Tutorial Biosinergia Notebook Human Practices Safety Sponsors


UTP-Software NewLogo.PNG


PHASE I: Recruitment and official campaign launch for UTP-Software Team 2012

May 17th,2012 This day the Instructors Grimaldo Elias made the official campaign launching.

    Foto poster del wiki.jpg

    This is our invitation Poster that we used on the Launching session at our Campus Lobby.

    Meetings & Launch


    Launch 1.jpg

    Launch 2.jpg

    Launch 3.jpg

    Launch 4.jpg



    About Our Meetings and work in this Notebook
    UTP-Software Team 2012, from the very beginning has been organizing meetings on academic period. We have worked a lot on weekends and after classes hours. General meetings were carried out regularly on Saturdays.

    Synbio Training sessions:

    From May 18th until June 14th we developed the Workshops and lectures to Synthetic Biology.

    Thematic Introductory Course in Synthetic Biology
    a. What is iGEM and synthetic biology?
    b. Molecules of Life and DNA Structure
    c. Central Dogma and information flow in biological systems
    d. Recombinant DNA Technology
    e. Introduction to Synthetic Biology and the BioBricks Standards
    f. Track Software iGEM competition

    PHASE II. DEVELOPMENT PROJECT IDEAS

    From June to the month of July we developed many ideas and platforms about possible ideas and projects. From these meetings came the following ideas:

    • Development of new tools for helping future iGEM teams.
    • Development tool for engineering projects, we first found the most important area in order to apply it in our country.

    Development of a prototype software to read and extract information from the parts registry about the protocols standards and we show evidence of this project in the following image:


      Prototipo 21 de julio.jpg



      Choosing Projects

      July 2012

      The UTP Team decided to develop new software for iGEM teams and individuals involved in Synbio.

      I. Mutagenesis study:
      We proposed to study ways to automate site directed mutagenesis in our software program. Meanwhile another group of students of our team were studying and implementing the development of primers in this process.

      II. We also began to develop an idea for a software that would help to develop projects related to energy production energy through biotechnology (biofuels). We chose the energy sector being both a national and global need, as our country uses mainly imported energy sources.

      PHASE III: Biofuel ToolKit Project

      August and September 2012
      In the month of August we decided to finally continue with our iGEM Begineer's tools, at the same time that of develop a more professional Engineering tool. In this sense our team develop work to implementate differents aspects of Assembly Biobricks analysis and Site Direct Mutagenesis, in our project. On the other hand part of our team study and develop an strategy to implement SynBio standards Biobricks and Devices in a database.

      Since beginning of September we make a lot of running and corrections to our code and concepts to finally get our S2MT Software.

      About "Biosinergia Project", we met with staff of the International Center of Open Source Software Development (http://www.cidetys.org.pa/), where we established a collaboration to introduce ourselves in Grid Computing as solution for the implementation of Biosinergia Project.
Retrieved from "http://2012.igem.org/Team:UTP-Software/Notebook"