| Reaction
| Propensity
| Comments
|
| Lldr promoter
|
| ø -> Lldr
| 0.1
| Constant production of Lldr
|
| Lldr -> ø
| 0.0001
| Constant degradation of Lldr relative to the creation of Lldr giving a molecule number of 1000.
|
| 2 Lldr -> Lldr2
| 3
| Dimerization of Lldr
|
| Lldr2 -> 2 Lldr
| 100
| Undimerization of Lldr giving a majority of Lldr in dimer.
|
| Lldr2 -> Lldr
| 0.0001
| Degradation of Lldr dimer.
|
| Lldr2 + Lact -> Lldr2Lact
| 0.0001
| Binding of lactate to Lldr dimer. Lactate is notconsumed.
|
| Lldr2Lact -> Lldr2
| 1
| Unbinding of Lactate to dimer
|
| Lldr2Lact -> Lldr
| 0.0001
| Degradation of Lldr in Lldr-Lactate complex
|
| Lldr2 + pLact -> pLactLldr2
| 1
| Binding of dimer to lld promoter
|
| pLactLldr2 -> Lldr2 + pLact
| 0.1
| Unbinding of dimer to promoter
|
| pLactLldr2 -> Lldr + pLact
| 0.0001
| Degradation of Lldr bound to prooter.
|
| pLactLldr2 + Lact -> pLactLldr2Lact + Lact
| 0.0001
| Binding of lactate to promoter dimer complex.
|
| pLactLldr2Lact -> pLactLldr2
| 1
| Release of lactate from promoter dimer complex.
|
| pLactLldr2Lact -> pLactLldr2Lact + mLuxi
| 0.005
| Transcription of activated promoter gives LuxI mRNA
|
| mLuxI -> ø
| 0.0025
| Degradation of LuxI mRNA
|
| mLuxI -> mLuxI + LuxI
| 0.0167
| Translation of LuxI mRNA
|
| LuxI -> ø
| 0.0002814
| Degradation of LuxI
|
| Vgb promoter
|
| ø -> FNR
| 1
| Constant production of FNR
|
| FNR -> ø
| 0.001
| Constant degradation of FNR
|
| ø -> ArcA
| 1
| Constant production of ArcA
|
| ArcA -> ø
| 0.001
| Constant degradation of ArcA
|
| FNR + 2 O2 -> FNRO + 2 O2
| 0.0005
| Oxidation of FNR. Oxygen is not consumed.
|
| FNR -> FNRO
| 0.0001
| Reduction of oxidized FNR.
|
| FNRO -> ø
| 0.001
| Degradation of oxidized FNR.
|
| ArcA + O2 -> ArcAO + O2
| 0.01
| Oxidation of Arca. Oxygen is not consumed.
|
| ArcaO -> ArcA
| 0.001
| Reduction of oxidized ArcA
|
| ArcAO -> ø
| 0.001
| Degradation of oxidized ArcA
|
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