Team:EPF-Lausanne/References

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{{:Team:EPF-Lausanne/Template/Header|References}}
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{{:Team:EPF-Lausanne/Template/Header|acknowledgments}}
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===Kasahara (2002)===
 
 +
 +
===Fussenegger 2011===
 +
'''A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice.'''
 +
 +
Ye H, Baba M, Peng R-W, Fussensgger M.
 +
 +
''Science'', '''2011''' Vol. 332 no. 6037 pp. 1565-1568 [http://www.sciencemag.org/content/332/6037/1565.abstract URL]
 +
 +
===Strickland 2008===
 +
'''Light-activated DNA binding in a designed allosteric protein'''
 +
 +
Devin Strickland, Keith Moffat, and Tobin R. Sosnick
 +
 +
''PNAS'', '''2008''' vol. 105 no. 31 10709-10714 [http://www.pnas.org/content/105/31/10709 URL]
 +
 +
===Kasahara 2002===
'''Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, and Chlamydomonas reinhardtii.'''
'''Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, and Chlamydomonas reinhardtii.'''
Line 9: Line 24:
''Plant Physiol'' '''2002''' June; 129(2): 762–773. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC161699 URL]
''Plant Physiol'' '''2002''' June; 129(2): 762–773. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC161699 URL]
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===Salomon (2000)===
+
===Salomon 2000===
-
 
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'''Photochemical and Mutational Analysis of the FMN-Binding Domains of the Plant Blue Light Receptor, Phototropin.'''
'''Photochemical and Mutational Analysis of the FMN-Binding Domains of the Plant Blue Light Receptor, Phototropin.'''
Michael Salomon, John M. Christie, Elke Knieb, Ulrika Lempert and Winslow R. Briggs.
Michael Salomon, John M. Christie, Elke Knieb, Ulrika Lempert and Winslow R. Briggs.
-
''Biochemistry'' '''2000''' 39 (31), 9401-9410 [http://pubs.acs.org/doi/full/10.1021/bi000585 URL]
+
''Biochemistry'' '''2000''' 39 (31), 9401-9410 [http://pubs.acs.org/doi/abs/10.1021/bi000585%2B URL]
 +
 
 +
===Yao 2008===
 +
'''Estimation of the available free energy in a LOV2-J alpha photoswitch.'''
 +
 
 +
Xiaolan Yao, Michael K. Rosen, and Kevin H. Gardner
 +
 
 +
''Nat Chem Biol.'' '''2008'''; 4(8): 491–497. [http://ukpmc.ac.uk/articles/PMC2597337 URL]
 +
 
 +
===Eitoku 2005===
 +
'''Conformational Dynamics of Phototropin 2 LOV2 Domain with the Linker upon Photoexcitation.'''
 +
 
 +
Takeshi Eitoku , Yusuke Nakasone , Daisuke Matsuoka , Satoru Tokutomi and Masahide Terazima
 +
 
 +
''J. Am. Chem. Soc.'', '''2005''', 127 (38), pp 13238–13244 [http://pubs.acs.org/doi/full/10.1021/ja052523i URL]
 +
 
 +
===Marchesini 1989===
 +
'''Effect of low-energy laser irradiation on colony formation capability in different human tumor cells in vitro.'''
 +
 
 +
Marchesini R, Dasdia T, Melloni E, Rocca E.
 +
 
 +
''Lasers Surg Med.'' '''1989''';9(1):59-62. [http://www.ncbi.nlm.nih.gov/pubmed/2927231 URL]
 +
 
 +
 
 +
 
 +
===Hockberger 1999===
 +
'''Activation of flavin-containing oxidases underlies light-induced production of H2O2 in mammalian cells.'''
 +
 
 +
Hockberger PE, Skimina TA, Centonze VE, Lavin C, Chu S, Dadras S, Reddy JK, White JG.
 +
 
 +
''Proc Natl Acad Sci USA.'' '''1999''' May 25;96(11):6255-60. [http://www.ncbi.nlm.nih.gov/pubmed/10339574 URL]
 +
 
 +
 
 +
 
 +
===Darzacq 2007===
 +
'''In vivo dynamics of RNA polymerase II transcription'''
 +
 
 +
Xavier Darzacq, Yaron Shav-Tal1, Valeria de Turris, Yehuda Brody, Shailesh M Shenoy, Robert D Phair and Robert H Singer.
 +
 
 +
''Nature Structural & Molecular Biology.'' '''2007'''; 14, 796 - 806 [http://www.nature.com/nsmb/journal/v14/n9/abs/nsmb1280.html URL]
 +
 
 +
===Schwanhausser 2011===
 +
'''Global quantification of mammalian gene expression control.'''
 +
 
 +
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M.
 +
 
 +
''Nature''. '''2011''' May 19;473(7347):337-42. [http://www.ncbi.nlm.nih.gov/pubmed/21593866 URL]
 +
 
 +
===Hendrik 2005===
 +
'''Structural Properties of the Promiscuous VP16 Activation Domain.'''
 +
 
 +
Hendrik R. A. Jonker , Rainer W. Wechselberger , Rolf Boelens , Gert E. Folkers , and Rob Kaptein
 +
 
 +
''Biochemistry'', '''2005''', 44 (3), pp 827–839 [http://pubs.acs.org/doi/full/10.1021/bi0482912 URL]
 +
 
 +
===Yang 1996===
 +
'''In vivo and in vitro Studies of TrpR-DNA Interactions.'''
 +
 
 +
Jie Yang, Angelo Gunasekera, Teresa A. Lavoie, Lihua Jin, Dale E. A. Lewis and Jannette Carey
 +
 
 +
''J. Mol. Biol.'' '''1996''' 258, 37–52 [http://www.ncbi.nlm.nih.gov/pubmed/8613990 URL]
 +
 
 +
===Jin 1993===
 +
'''Thermodynamics of ligand binding to trp repressor.'''
 +
 
 +
Lihua Jin, Jie Yang, Jannette Carey
 +
 
 +
''Biochemistry'', '''1993''', 32 (28), pp 7302–7309 [http://pubs.acs.org/doi/abs/10.1021/bi00079a029 URL]
 +
 
 +
===Sadowski 1988===
 +
'''GAL4-VP16 is an unusually potent transcriptional activator.'''
 +
 
 +
Sadowski I, Ma J, Triezenberg S, Ptashne M.
 +
 
 +
''Nature''. '''1988''' Oct 6;335(6190):563-4. [http://www.ncbi.nlm.nih.gov/pubmed/3047590 URL]
 +
 
 +
===Cohen 2009===
 +
'''Quantification of Plasmid DNA Copies in the Nucleus after Lipoplex and Polyplex Transfection.'''
 +
 
 +
Richard N. Cohen, Marieke A.E.M. van der Aa, Nichole Macaraeg, Ai Ping Lee and Francis C. Szoka, Jr.
 +
 
 +
''J Control Release''. '''2009''' April 17; 135(2): 166–174. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765102/ URL]
 +
 
{{:Team:EPF-Lausanne/Template/Footer}}
{{:Team:EPF-Lausanne/Template/Footer}}

Latest revision as of 21:41, 26 September 2012


Contents

Fussenegger 2011

A synthetic optogenetic transcription device enhances blood-glucose homeostasis in mice.

Ye H, Baba M, Peng R-W, Fussensgger M.

Science, 2011 Vol. 332 no. 6037 pp. 1565-1568 [http://www.sciencemag.org/content/332/6037/1565.abstract URL]

Strickland 2008

Light-activated DNA binding in a designed allosteric protein

Devin Strickland, Keith Moffat, and Tobin R. Sosnick

PNAS, 2008 vol. 105 no. 31 10709-10714 [http://www.pnas.org/content/105/31/10709 URL]

Kasahara 2002

Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, and Chlamydomonas reinhardtii.

Masahiro Kasahara, Trevor E. Swartz, Margaret A. Olney, Akihiko Onodera, Nobuyoshi Mochizuki, Hideya Fukuzawa, Erika Asamizu, Satoshi Tabata, Hiromi Kanegae, Makoto Takano, John M. Christie, Akira Nagatani, and Winslow R. Briggs.

Plant Physiol 2002 June; 129(2): 762–773. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC161699 URL]

Salomon 2000

Photochemical and Mutational Analysis of the FMN-Binding Domains of the Plant Blue Light Receptor, Phototropin.

Michael Salomon, John M. Christie, Elke Knieb, Ulrika Lempert and Winslow R. Briggs.

Biochemistry 2000 39 (31), 9401-9410 [http://pubs.acs.org/doi/abs/10.1021/bi000585%2B URL]

Yao 2008

Estimation of the available free energy in a LOV2-J alpha photoswitch.

Xiaolan Yao, Michael K. Rosen, and Kevin H. Gardner

Nat Chem Biol. 2008; 4(8): 491–497. [http://ukpmc.ac.uk/articles/PMC2597337 URL]

Eitoku 2005

Conformational Dynamics of Phototropin 2 LOV2 Domain with the Linker upon Photoexcitation.

Takeshi Eitoku , Yusuke Nakasone , Daisuke Matsuoka , Satoru Tokutomi and Masahide Terazima

J. Am. Chem. Soc., 2005, 127 (38), pp 13238–13244 [http://pubs.acs.org/doi/full/10.1021/ja052523i URL]

Marchesini 1989

Effect of low-energy laser irradiation on colony formation capability in different human tumor cells in vitro.

Marchesini R, Dasdia T, Melloni E, Rocca E.

Lasers Surg Med. 1989;9(1):59-62. [http://www.ncbi.nlm.nih.gov/pubmed/2927231 URL]


Hockberger 1999

Activation of flavin-containing oxidases underlies light-induced production of H2O2 in mammalian cells.

Hockberger PE, Skimina TA, Centonze VE, Lavin C, Chu S, Dadras S, Reddy JK, White JG.

Proc Natl Acad Sci USA. 1999 May 25;96(11):6255-60. [http://www.ncbi.nlm.nih.gov/pubmed/10339574 URL]


Darzacq 2007

In vivo dynamics of RNA polymerase II transcription

Xavier Darzacq, Yaron Shav-Tal1, Valeria de Turris, Yehuda Brody, Shailesh M Shenoy, Robert D Phair and Robert H Singer.

Nature Structural & Molecular Biology. 2007; 14, 796 - 806 [http://www.nature.com/nsmb/journal/v14/n9/abs/nsmb1280.html URL]

Schwanhausser 2011

Global quantification of mammalian gene expression control.

Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M.

Nature. 2011 May 19;473(7347):337-42. [http://www.ncbi.nlm.nih.gov/pubmed/21593866 URL]

Hendrik 2005

Structural Properties of the Promiscuous VP16 Activation Domain.

Hendrik R. A. Jonker , Rainer W. Wechselberger , Rolf Boelens , Gert E. Folkers , and Rob Kaptein

Biochemistry, 2005, 44 (3), pp 827–839 [http://pubs.acs.org/doi/full/10.1021/bi0482912 URL]

Yang 1996

In vivo and in vitro Studies of TrpR-DNA Interactions.

Jie Yang, Angelo Gunasekera, Teresa A. Lavoie, Lihua Jin, Dale E. A. Lewis and Jannette Carey

J. Mol. Biol. 1996 258, 37–52 [http://www.ncbi.nlm.nih.gov/pubmed/8613990 URL]

Jin 1993

Thermodynamics of ligand binding to trp repressor.

Lihua Jin, Jie Yang, Jannette Carey

Biochemistry, 1993, 32 (28), pp 7302–7309 [http://pubs.acs.org/doi/abs/10.1021/bi00079a029 URL]

Sadowski 1988

GAL4-VP16 is an unusually potent transcriptional activator.

Sadowski I, Ma J, Triezenberg S, Ptashne M.

Nature. 1988 Oct 6;335(6190):563-4. [http://www.ncbi.nlm.nih.gov/pubmed/3047590 URL]

Cohen 2009

Quantification of Plasmid DNA Copies in the Nucleus after Lipoplex and Polyplex Transfection.

Richard N. Cohen, Marieke A.E.M. van der Aa, Nichole Macaraeg, Ai Ping Lee and Francis C. Szoka, Jr.

J Control Release. 2009 April 17; 135(2): 166–174. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765102/ URL]


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