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Team:TU Darmstadt/Protocols/Activity assay
From 2012.igem.org
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<li><a href="/Team:TU_Darmstadt/Safety" title="Safety">Safety</a></li> | <li><a href="/Team:TU_Darmstadt/Safety" title="Safety">Safety</a></li> | ||
<li><a href="/Team:TU_Darmstadt/Downloads" title="Downloads">Downloads</a></li></ul></li> | <li><a href="/Team:TU_Darmstadt/Downloads" title="Downloads">Downloads</a></li></ul></li> | ||
| - | <li><a href="/Team:TU_Darmstadt/Human_Practice" title="Human Practice">Human Practice</a | + | <li><a href="/Team:TU_Darmstadt/Human_Practice" title="Human Practice">Human Practice</a></li> |
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<li><a href="/Team:TU_Darmstadt/Sponsors" title="Sponsors">Sponsors</a><ul> | <li><a href="/Team:TU_Darmstadt/Sponsors" title="Sponsors">Sponsors</a><ul> | ||
<li><a href="/Team:TU_Darmstadt/Sponsors" title="Sponsors">Overview</a></li> | <li><a href="/Team:TU_Darmstadt/Sponsors" title="Sponsors">Overview</a></li> | ||
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* controll group is from the 6th point of same bacterial strain but carrying only [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808030 BBa_K808030] (RBS-PhoA-His6tag-pNBEst13-Myctag-EstA) | * controll group is from the 6th point of same bacterial strain but carrying only [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808030 BBa_K808030] (RBS-PhoA-His6tag-pNBEst13-Myctag-EstA) | ||
* check every day for lysis area | * check every day for lysis area | ||
| - | === LB-Agar- | + | === LB-Agar-Bromothymol blue === |
* stick in six sterile PET particles | * stick in six sterile PET particles | ||
* inoculate the PET particles with [https://2012.igem.org/Team:TU_Darmstadt/Materials/DH5alpha DH5α] containing pSB1C3-whole-construct and incubate at 37°C | * inoculate the PET particles with [https://2012.igem.org/Team:TU_Darmstadt/Materials/DH5alpha DH5α] containing pSB1C3-whole-construct and incubate at 37°C | ||
* check every day for colour change (pH decrease when PET gets digested) | * check every day for colour change (pH decrease when PET gets digested) | ||
* controll group is on LB-Agar-Bromthymol blue without arabinose | * controll group is on LB-Agar-Bromthymol blue without arabinose | ||
| + | |||
=== DYT-medium === | === DYT-medium === | ||
* inoculate 50 mL [https://2012.igem.org/Team:TU_Darmstadt/Materials/DYT DYT-medium]-CAM with bacteria containing [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808032 BBa_K808032] | * inoculate 50 mL [https://2012.igem.org/Team:TU_Darmstadt/Materials/DYT DYT-medium]-CAM with bacteria containing [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808032 BBa_K808032] | ||
Latest revision as of 21:35, 26 September 2012
Contents |
Activity Assays
ELISA Reader
LB-Agar-Tributyrin
- inoculate the plate at 5 points with DH5α containing [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808032 BBa_K808032](L-arabinose regulated RBS-PhoA-His6tag-pNBEst13-Myctag-EstA) and incubate at 37°C
- controll group is from the 6th point of same bacterial strain but carrying only [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808030 BBa_K808030] (RBS-PhoA-His6tag-pNBEst13-Myctag-EstA)
- check every day for lysis area
LB-Agar-Bromothymol blue
- stick in six sterile PET particles
- inoculate the PET particles with DH5α containing pSB1C3-whole-construct and incubate at 37°C
- check every day for colour change (pH decrease when PET gets digested)
- controll group is on LB-Agar-Bromthymol blue without arabinose
DYT-medium
- inoculate 50 mL DYT-medium-CAM with bacteria containing [http://partsregistry.org/wiki/index.php?title=Part:BBa_K808032 BBa_K808032]
- incubate at 37°C to an OD600 = 0.6
- incubate on ice for 15 min before inducing
- prepare sterile test tubes
- fill the tubes in the way shown in table 1
| Component | tst tube 1 | test tube 2 | test tube 3 | test tube 4 |
|---|---|---|---|---|
| DYT-medium | x | x | x | x |
| PET particle | x | x | x | |
| bacteria | x | x | x | |
| induced | x | x | x |
- check every day the colour of the DYT-medium and take a picture
- digestion of PET particles leads to a decreasing pH and will be shown by a yellow color
