Team:Uppsala University/Modelling
From 2012.igem.org
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- | <tr> | + | <tr><td class="subtext"><h2>Modelling of small RNA interacting with the AAC(6)’5-UTR</h2></td> |
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- | <td class="subtext"><h2>Modelling of small RNA interacting with the AAC(6)’5-UTR</h2></td> | + | |
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At last, a prediction of the structure between the sRNA UU17 and AAC(6’)UTR mRNA was modelled. | At last, a prediction of the structure between the sRNA UU17 and AAC(6’)UTR mRNA was modelled. | ||
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+ | References | ||
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- | + | [1] Rodrigo, G., Landrain, T.E., Jaramillo, A., 2012. De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells. Proc. Natl. Acad. Sci. U.S.A. 109, 15271–15276. | |
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- | [1] Rodrigo, G., Landrain, T.E., Jaramillo, A., 2012. De novo automated design of small | + | |
- | RNA circuits for engineering synthetic riboregulation in living cells. | + | |
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- | [3]. Samuel C Flores and Russ B Altman. 2010 Turning limited | + | [2] Zuker, M., 1989b. The use of dynamic programming algorithms in RNA secondary structure prediction, 159–184. In |
- | experimental information intio 3D models of RNA. RNA 16(9):1769-78. | + | Waterman, M., ed. Mathematical Methods for DNA Sequences, CRC Press, Boca Raton, FL<br> |
- | <br>Notes about CLC workbench: Uses thermodynamical parameters of Mfold | + | [3]. Samuel C Flores and Russ B Altman. 2010 Turning limited experimental information intio 3D models of RNA. RNA 16(9):1769-78. |
- | + | <br>Notes about CLC workbench: Uses thermodynamical parameters of Mfold, version 3, found on http://www.bioinfo.rpi.edu/zukerm/rna/energy/ | |
<br>[4] Erik Holmquist | <br>[4] Erik Holmquist | ||
Macromolecular Matchmaking | Macromolecular Matchmaking | ||
- | Mechanisms and Biology of | + | Mechanisms and Biology of Bacterial Small RNAs, 2012 |
- | Bacterial Small RNAs | + | |
- | 2012 | + | |
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[5] | [5] | ||
- | Smith, C., Heyne, S., Richter, A.S., Will, S., Backofen, R., 2010. | + | Smith, C., Heyne, S., Richter, A.S., Will, S., Backofen, R., 2010. Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA. |
- | Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA. | + | |
Nucleic Acids Research 38, W373–W377. | Nucleic Acids Research 38, W373–W377. | ||
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Latest revision as of 03:09, 27 October 2012
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