Team:SUSTC-Shenzhen-B/algorithm

From 2012.igem.org

(Difference between revisions)
Line 20: Line 20:
<p>3.Calculate the efficiency of terminator using the simulation formular created by our team.</p>
<p>3.Calculate the efficiency of terminator using the simulation formular created by our team.</p>
-
               <h3><b>Previous Algorithm</b></h3>
+
                
-
          <img src="http://2012.igem.org/wiki/images/archive/5/5a/20120925111143%21Project.introduction.2JPG.JPG" class="img_fl img_border" />
+
         
-
<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
+
 
-
               <h3><b>Current Algorithm</b></h3>
+
                
-
                       <img src="http://2012.igem.org/wiki/images/0/0e/Overview.2.JPG" class="img_fl img_border" />
+
                        
-
<br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br>
+
 
               <h3><b>About Scoring Systems</b></h3>
               <h3><b>About Scoring Systems</b></h3>
<p>Three scoring systems mentioned above were all created by researchers to predict rho-independent transcription terminators. If the score of a sequence is good, it is more likely to be a terminator sequence. The score of terminator consists of two parts, corresponding to stemloop and T tail. Here we made a table to show the similarity and difference of these three scoring systems.</p>
<p>Three scoring systems mentioned above were all created by researchers to predict rho-independent transcription terminators. If the score of a sequence is good, it is more likely to be a terminator sequence. The score of terminator consists of two parts, corresponding to stemloop and T tail. Here we made a table to show the similarity and difference of these three scoring systems.</p>

Revision as of 18:13, 26 September 2012

SUSTC iGEM Theme - Free CSS Template

SUSTC iGEM Theme - Free CSS Template

Overview

TTEC is the first published software to predict terminator efficiency. It takes DNA sequences as input and returns the terminator efficiency value.

To calculate the efficiency of terminator efficiency, there are three steps.

1.Cut the input terminator sequence into three parts, including A tail, stemloop and T tail.

2.Score the terminator.

3.Calculate the efficiency of terminator using the simulation formular created by our team.

About Scoring Systems

Three scoring systems mentioned above were all created by researchers to predict rho-independent transcription terminators. If the score of a sequence is good, it is more likely to be a terminator sequence. The score of terminator consists of two parts, corresponding to stemloop and T tail. Here we made a table to show the similarity and difference of these three scoring systems.

To know more about the scoring systems, please click each second menu.