From 2012.igem.org

Revision as of 16:52, 25 September 2012

Establishment of a new chassis

So far, synthetic biology has mostly focused on bacteria, since they are simple to engineer. iGEM teams and laboratories have worked on unicellular organisms in order to understand the underlying biology and have developed an impressive database of molecular parts. Some work has also been done on engineering mammalian cells and a few iGEM teams have followed this trend. Synthetic biologists are now imagining the rational design of multicellular organisms with numerous applications ranging from gene therapy or drug production to environmental monitoring. This year, our team would like to be part of that challenge.

The arrival of Xenopus as a chassis in synthetic biology requires the creation of new standards and protocols that the community will be able to build on. We provided the registry with such tools that allow rapid construction and characterization of devices in vivo, and include debugging tools. We think they will be very useful for later iGEM teams and synthetic biologists who wish to work with Xenopus for building multicellular systems.

You want to make the move from bacteria to multicellular synthetic biology ? Make sure you check out our Introduction to Xenopus page, and our Frogs for dummies page to make sure you are aware of all the differences between genetic engineering in eukaryotes

This year, the Evry iGEM team is going to be the one of the first iGEM team to work on a vertebrate. Our work is focused both on developing a system for intercellular and inter-tissue communication, and creating the tools for the iGEM community to easily express genes in specific tissues. We believe the tadpole is a chassis of choice for iGEM on multi cellular organisms, as experiments can be conducted in one week using microinjection methods. We hope to demonstrate the feasibility of engineering Xenopus in one summer for an iGEM project, and to create a great tool for multicellular synthetic biology: A synthetic, orthogonal hormonal system.

The simple molecular strategy to build eukaryotic plasmid ready to use:

Embryos were not fed during all the week of experiment, they grew up with their own vitellus.
Pictures were taken with the Zeiss stereomicroscope: SteREO Lumar V12 with the camera AxioCamMR3.
The injection tutorial explains very simply with diagram how we did injection and how take care about your embryos and tadpole. The experiment carries on 5 days, from the unfertilized egg to a swimming tadpole at Institute of Systems & Synthetic Biology of Evry in the Metamorphosys group.



Plasmids injected: pCS2+ with CMV promoter and GFP-aid reporter


We injected 2.3 nl of plasmid at 100ng.µl-1 - embryos were stored at 21°C during all the experiment.

pCS2+ GFP-aid: contains the constitutive and ubiquitous promoter CMV and the aid sequenced of the aid system fusionned to GFP (Green Fluorescent Protein)(Nishimura et al., 2009), this Biobrick created by our team is BBa_K812010, and it was integrated into our Eucaryotic plasmid BBa_K812000 . Number of Plasmids injected: ~ 3.78E+7



pCS2+ GFP-aid

24h after injection


Embryos are around

z-stack of the embryo

Some embryos express GFP-aid and some others do not, it means that the injection did not work in some cases or the embryos do not express GFP-aid



48h after injection


Embryos are at


The expression of GFP-aid is localized in different tissues for each embryo, in spite of the promoter being constitutive (CMV). We can think that the plasmid does not diffuse homogeneously in the embryos because of the vitellus viscosity. This question was raised in one of the modelling part



Three days after injection


Embryos are at

z-stack pictures: pCS2+ CMV_GFP-aid, GFP expression is not observed in the same tissues between tadpoles: for example the embryo on the left picture expresses GFP in chevron-like structures in the tail (the somites), on the right picture the GFP expression is localized in the epidermis. The only part of the tadpole moving is the heart beating (between the head and the intestines)



The expression of GFP-aid is localized in different tissue for each tadpole, like the day before. GFP is present in same tissue, it means that the plasmid stays in the same cells.



Four days after injection


Embryos are at

The GFP is still present in specific tissue, but also the GFP is decreasing. Plasmids could be ruined by cells, and/or the quantity of plasmids could decrease in each cells which involved the diminution of GFP in each cells, after that it is more difficult to see GFP. Pictures with the LSM 510 META Laser Scanning Microscope from Zeiss.
A great thank to Dr Daniel Stockholm and Genethon for using this microscope.


The tadpole 1 expresses GFP-aid in epidermic cells, whereas the tadpole 2 expresses GFP-aid in optical nerve, olfactory nerve, tail muscle cells and branchial basket.





The characterization of all reporter and promoters is here.





Conclusion


We showed that our constructions express our reporters with the CMV promoter. These parts are considered characterized. Nevertheless we expected a more uniform expression of the reporters with the CMV promoter. Spectral variants of fluorescent proteins could be expressed in different tissues. Within one tadpole the fluorescent proteins were observed in one to four different tissues, and tissues were different between tadpoles.
Explanation: The plasmid DNA does not diffuse in the egg and stay in the same area around the injection site. This means that depending on the injection site, the plasmid will be inherited by a given set of cells within the tadpole. This question was raised in our model. An other reason could be that the metabolism of each tissue specific cell is different and change during the tadpole's development.
Moreover the expression of reporters decreases during time, because plasmid DNA is subjected to a catabolic activity during development but also plasmid DNA gets diluted as cells proliferate and the quantity of plasmid DNA decreases for each cell.



References:

1. Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines., Chae J., Zimmerman L.B., Grainger R.M., Mechanisms of development 117:1-2, 2002
2. Xenopus: a prince among models for pronephric kidney development., Jones E., JASN 16:2, 2005
3. An auxin-based degron system for the rapid depletion of proteins in nonplant cells, Nishimura K., Fukagawa T., Takisawa H., Kakimoto T., Kanemaki M., Nature Methods 6:12, 2009


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