Team:Bordeaux/SourceCodeModelling

From 2012.igem.org

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<a href="http://cdjemiel.free.fr/igem2012/code/PEB.py" title="Mst" target="_blank">Download file PEP.py</a>
<a href="http://cdjemiel.free.fr/igem2012/code/PEB.py" title="Mst" target="_blank">Download file PEP.py</a>
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<h4>Create a gif </h4>
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<li><a href="http://cdjemiel.free.fr/igem2012/code/create_gif.py" title="Mst" target="_blank">Download file create_gif.py</a></li>
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<li><a href="http://cdjemiel.free.fr/igem2012/code/images2gif.py" title="Mst" target="_blank">Download file images2gif.py</a></li>
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Revision as of 09:12, 26 September 2012

Modelling - iGEM Bordeaux 2012

iGEM - Bordeaux - Source Code

Init_PEB.py file



Download file PEP.py
r"""
File contains var
"""

__projet__ = 'iGEM '
__author__ = 'Djemiel Christophe, Freche Arnaud'
__copyright__ = 'Copyright (c) 2012 BordeauxTeam'
__license__ = ''
__vcs_id__ = '$Id$'
__version__ = '1.0'

#var 
directory_pictures="pictures_simulation/"

#initial parameters 
nb_bacteria=8000

#features constitutive
seuil_acivation_recepteur1=0.75
seuil_acivation_recepteur2=0.75
seuil_acivation_recepteur3=0.75

#mutation
seuil_mutation_operon=0.05
seuil_mutation_LasR=0.05
seuil_mutation_LuxS=0.05
seuil_mutation_BetaGal=0.05
seuil_mutation_LuxBox=0.05
seuil_mutation_LuxI=0.05
seuil_mutation_MCherry=0.05
seuil_mutation_QBox=0.05
seuil_mutation_LasI=0.05
seuil_mutation_GFP=0.05

#change state
seuil_etat1_2=0.05

#noise
noise_pourcent=0.0001
seuil_bruit1=0.33
seuil_bruit2=0.66

#stimulus light
seuil_transfo_lumiere=0.7
diameter_light=1

rayon_action=0.075


 

PEP.py file



Download file PEP.py

Create a gif



  • Download file create_gif.py
  • Download file images2gif.py