Team:Bordeaux/SourceCodeModelling

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<div class="grid9">
<div class="grid9">
<h2>iGEM - Bordeaux - Source Code</h2>
<h2>iGEM - Bordeaux - Source Code</h2>
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<p>
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<h4>Init_PEB.py file</h4>
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<hr>
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</br>
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<li><a href="http://cdjemiel.free.fr/igem2012/code/init_PEB.py" title="Mst" target="_blank">Download file PEP.py</a></li>
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</br>
                                                 <pre class="prettyprint lang-py">
                                                 <pre class="prettyprint lang-py">
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for i in range (nb_bacteria):
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r"""
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List = [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
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File contains var
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features_bacteria()
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"""
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list_bacteria.append(List)
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feature_constitutive()
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__projet__ = 'iGEM '
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do_plot("0","temps0")
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__author__ = 'Djemiel Christophe, Freche Arnaud'
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mutation()
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__copyright__ = 'Copyright (c) 2012 BordeauxTeam'
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noise(noise_pourcent)
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__license__ = ''
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active_state()
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__vcs_id__ = '$Id$'
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do_plot("1","bruit")
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__version__ = '1.0'
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stimulus_light()
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active_state()
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#var
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do_plot("2","light")
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directory_pictures="pictures_simulation/"
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stimulus_factor(0.05,rayon_action)
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mutation()
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#initial parameters
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do_plot("3","tours1")
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nb_bacteria=8000
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stimulus_factor(0.10,rayon_action)
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mutation()
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#features constitutive
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do_plot("4","tours2")
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seuil_acivation_recepteur1=0.75
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                                                </pre>
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seuil_acivation_recepteur2=0.75
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seuil_acivation_recepteur3=0.75
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#mutation
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seuil_mutation_operon=0.05
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seuil_mutation_LasR=0.05
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seuil_mutation_LuxS=0.05
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seuil_mutation_BetaGal=0.05
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seuil_mutation_LuxBox=0.05
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seuil_mutation_LuxI=0.05
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seuil_mutation_MCherry=0.05
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seuil_mutation_QBox=0.05
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seuil_mutation_LasI=0.05
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seuil_mutation_GFP=0.05
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#change state
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seuil_etat1_2=0.05
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#noise
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noise_pourcent=0.0001
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seuil_bruit1=0.33
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seuil_bruit2=0.66
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#stimulus light
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seuil_transfo_lumiere=0.7
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diameter_light=1
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rayon_action=0.075
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</pre>
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</p>
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<p>
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<h4>PEB.py file (Main program)</h4>
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<hr>
 +
</br>
 +
<li><a href="http://cdjemiel.free.fr/igem2012/code/PEB.py" title="Mst" target="_blank">Download file PEB.py</a></li>
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</p>
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<p>
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<h4>Create a gif </h4>
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<hr>
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</br>
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<li><a href="http://cdjemiel.free.fr/igem2012/code/create_gif.py" title="Mst" target="_blank">Download file create_gif.py</a></li>
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<li><a href="http://cdjemiel.free.fr/igem2012/code/images2gif.py" title="Mst" target="_blank">Download file images2gif.py</a></li>
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</br>
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Reference : <a href="http://www.somethinkodd.com/oddthinking/2005/12/06/python-imaging-library-pil-and-animated-gifs/" target="_blank">Python Imaging Library (PIL) and Animated GIFs</a>
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</p>
</div>
</div>
</div>
</div>

Latest revision as of 09:29, 26 September 2012

Modelling - iGEM Bordeaux 2012

  • Modelling

iGEM - Bordeaux - Source Code

Init_PEB.py file


  • Download file PEP.py

    • r"""
File contains var
"""

__projet__ = 'iGEM '
__author__ = 'Djemiel Christophe, Freche Arnaud'
__copyright__ = 'Copyright (c) 2012 BordeauxTeam'
__license__ = ''
__vcs_id__ = '$Id$'
__version__ = '1.0'

#var 
directory_pictures="pictures_simulation/"

#initial parameters 
nb_bacteria=8000

#features constitutive
seuil_acivation_recepteur1=0.75
seuil_acivation_recepteur2=0.75
seuil_acivation_recepteur3=0.75

#mutation
seuil_mutation_operon=0.05
seuil_mutation_LasR=0.05
seuil_mutation_LuxS=0.05
seuil_mutation_BetaGal=0.05
seuil_mutation_LuxBox=0.05
seuil_mutation_LuxI=0.05
seuil_mutation_MCherry=0.05
seuil_mutation_QBox=0.05
seuil_mutation_LasI=0.05
seuil_mutation_GFP=0.05

#change state
seuil_etat1_2=0.05

#noise
noise_pourcent=0.0001
seuil_bruit1=0.33
seuil_bruit2=0.66

#stimulus light
seuil_transfo_lumiere=0.7
diameter_light=1

rayon_action=0.075

    PEB.py file (Main program)


  • Download file PEB.py

    • Create a gif


  • Download file create_gif.py
  • Download file images2gif.py

    • Reference : Python Imaging Library (PIL) and Animated GIFs

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    Retrieved from "http://2012.igem.org/Team:Bordeaux/SourceCodeModelling"