Team:Bordeaux/SourceCodeModelling
From 2012.igem.org
(Difference between revisions)
ChristopheD (Talk | contribs) (Created page with "<html lang="en"> <head> <title>Modelling - iGEM Bordeaux 2012</title> <meta charset="utf-8"> <link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/reset.css" type=...") |
ChristopheD (Talk | contribs) |
||
(23 intermediate revisions not shown) | |||
Line 61: | Line 61: | ||
<div class="grid9"> | <div class="grid9"> | ||
<h2>iGEM - Bordeaux - Source Code</h2> | <h2>iGEM - Bordeaux - Source Code</h2> | ||
+ | <p> | ||
+ | <h4>Init_PEB.py file</h4> | ||
+ | <hr> | ||
+ | </br> | ||
+ | <li><a href="http://cdjemiel.free.fr/igem2012/code/init_PEB.py" title="Mst" target="_blank">Download file PEP.py</a></li> | ||
+ | </br> | ||
<pre class="prettyprint lang-py"> | <pre class="prettyprint lang-py"> | ||
- | + | r""" | |
- | + | File contains var | |
- | + | """ | |
- | + | ||
- | + | __projet__ = 'iGEM ' | |
- | + | __author__ = 'Djemiel Christophe, Freche Arnaud' | |
- | mutation | + | __copyright__ = 'Copyright (c) 2012 BordeauxTeam' |
- | noise | + | __license__ = '' |
- | + | __vcs_id__ = '$Id$' | |
- | + | __version__ = '1.0' | |
- | + | ||
- | + | #var | |
- | + | directory_pictures="pictures_simulation/" | |
- | + | ||
- | + | #initial parameters | |
- | + | nb_bacteria=8000 | |
- | + | ||
- | + | #features constitutive | |
- | + | seuil_acivation_recepteur1=0.75 | |
- | + | seuil_acivation_recepteur2=0.75 | |
- | + | seuil_acivation_recepteur3=0.75 | |
+ | |||
+ | #mutation | ||
+ | seuil_mutation_operon=0.05 | ||
+ | seuil_mutation_LasR=0.05 | ||
+ | seuil_mutation_LuxS=0.05 | ||
+ | seuil_mutation_BetaGal=0.05 | ||
+ | seuil_mutation_LuxBox=0.05 | ||
+ | seuil_mutation_LuxI=0.05 | ||
+ | seuil_mutation_MCherry=0.05 | ||
+ | seuil_mutation_QBox=0.05 | ||
+ | seuil_mutation_LasI=0.05 | ||
+ | seuil_mutation_GFP=0.05 | ||
+ | |||
+ | #change state | ||
+ | seuil_etat1_2=0.05 | ||
+ | |||
+ | #noise | ||
+ | noise_pourcent=0.0001 | ||
+ | seuil_bruit1=0.33 | ||
+ | seuil_bruit2=0.66 | ||
+ | |||
+ | #stimulus light | ||
+ | seuil_transfo_lumiere=0.7 | ||
+ | diameter_light=1 | ||
+ | |||
+ | rayon_action=0.075 | ||
+ | |||
+ | |||
+ | </pre> | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | <h4>PEB.py file (Main program)</h4> | ||
+ | <hr> | ||
+ | </br> | ||
+ | <li><a href="http://cdjemiel.free.fr/igem2012/code/PEB.py" title="Mst" target="_blank">Download file PEB.py</a></li> | ||
+ | </p> | ||
+ | |||
+ | <p> | ||
+ | <h4>Create a gif </h4> | ||
+ | <hr> | ||
+ | </br> | ||
+ | <li><a href="http://cdjemiel.free.fr/igem2012/code/create_gif.py" title="Mst" target="_blank">Download file create_gif.py</a></li> | ||
+ | <li><a href="http://cdjemiel.free.fr/igem2012/code/images2gif.py" title="Mst" target="_blank">Download file images2gif.py</a></li> | ||
+ | </br> | ||
+ | Reference : <a href="http://www.somethinkodd.com/oddthinking/2005/12/06/python-imaging-library-pil-and-animated-gifs/" target="_blank">Python Imaging Library (PIL) and Animated GIFs</a> | ||
+ | </p> | ||
</div> | </div> | ||
</div> | </div> |
Latest revision as of 09:29, 26 September 2012
iGEM - Bordeaux - Source Code
Init_PEB.py file
r""" File contains var """ __projet__ = 'iGEM ' __author__ = 'Djemiel Christophe, Freche Arnaud' __copyright__ = 'Copyright (c) 2012 BordeauxTeam' __license__ = '' __vcs_id__ = '$Id$' __version__ = '1.0' #var directory_pictures="pictures_simulation/" #initial parameters nb_bacteria=8000 #features constitutive seuil_acivation_recepteur1=0.75 seuil_acivation_recepteur2=0.75 seuil_acivation_recepteur3=0.75 #mutation seuil_mutation_operon=0.05 seuil_mutation_LasR=0.05 seuil_mutation_LuxS=0.05 seuil_mutation_BetaGal=0.05 seuil_mutation_LuxBox=0.05 seuil_mutation_LuxI=0.05 seuil_mutation_MCherry=0.05 seuil_mutation_QBox=0.05 seuil_mutation_LasI=0.05 seuil_mutation_GFP=0.05 #change state seuil_etat1_2=0.05 #noise noise_pourcent=0.0001 seuil_bruit1=0.33 seuil_bruit2=0.66 #stimulus light seuil_transfo_lumiere=0.7 diameter_light=1 rayon_action=0.075
PEB.py file (Main program)