Team:EPF-Lausanne/Modeling/Photoactivation

From 2012.igem.org

(Difference between revisions)
(Created page with "{{:Team:EPF-Lausanne/Template/Header|Photoactivation}} =Introduction= ==Why?== Hockberger et al (1999) suggest that blue light up to 470 nm can have some phototoxic effect on m...")
(Why?)
Line 4: Line 4:
==Why?==
==Why?==
-
Hockberger et al (1999) suggest that blue light up to 470 nm can have some phototoxic effect on mammalian cells, from 2 to 6 J/cm². In our experiments, we have observed a much higher cell death rate in the cultures exposed for 24h to blue light than in the control. 24h at 20 mW/m² is actually more than 1700 J/cm². To stay on the safe side, and give the cells  6 J/cm² during 4 hours would mean an average of 0.4 mW/cm². How much activation can we get with this rate? Will we have to push it up? What lighting pattern will give best results?
+
Hockberger et al (1999) suggest that blue light up to 470 nm can have some phototoxic effect on mammalian cells, from 2 to 6 J/cm². In our experiments, we have observed a much higher cell death rate in the cultures exposed for 24h to blue light than in the control. 24h at 20 mW/m² is actually more than 1700 J/cm². To stay on the safe side, and give the cells  6 J/cm² during 4 hours would mean an average of 0.4 mW/cm².  
 +
* How much activation can we get with this rate?  
 +
* Will we have to push it up?  
 +
* What lighting pattern will give best results?
To optimize the number of experiments to perform, we have built a simple model to predict the proportion of photoproduct to be expected at every time point when a sample with LovTAP-VP16 when it's illuminated with a time varying light input.
To optimize the number of experiments to perform, we have built a simple model to predict the proportion of photoproduct to be expected at every time point when a sample with LovTAP-VP16 when it's illuminated with a time varying light input.
{{:Team:EPF-Lausanne/Template/Footer}}
{{:Team:EPF-Lausanne/Template/Footer}}

Revision as of 13:26, 23 September 2012

Introduction

Why?

Hockberger et al (1999) suggest that blue light up to 470 nm can have some phototoxic effect on mammalian cells, from 2 to 6 J/cm². In our experiments, we have observed a much higher cell death rate in the cultures exposed for 24h to blue light than in the control. 24h at 20 mW/m² is actually more than 1700 J/cm². To stay on the safe side, and give the cells 6 J/cm² during 4 hours would mean an average of 0.4 mW/cm².

  • How much activation can we get with this rate?
  • Will we have to push it up?
  • What lighting pattern will give best results?

To optimize the number of experiments to perform, we have built a simple model to predict the proportion of photoproduct to be expected at every time point when a sample with LovTAP-VP16 when it's illuminated with a time varying light input.