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Team:Evry/parameters
From 2012.igem.org
(Difference between revisions)
| Line 22: | Line 22: | ||
<td>cm</td> | <td>cm</td> | ||
<td>tail length</td> | <td>tail length</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 31: | Line 31: | ||
<td>cm</td> | <td>cm</td> | ||
<td>max tail width</td> | <td>max tail width</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 40: | Line 40: | ||
<td>cm</td> | <td>cm</td> | ||
<td>head radius</td> | <td>head radius</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 49: | Line 49: | ||
<td>μm</td> | <td>μm</td> | ||
<td>skin thickness</td> | <td>skin thickness</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 75: | Line 75: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>tail volume</td> | <td>tail volume</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | ||
</tr> | </tr> | ||
| Line 84: | Line 84: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>head volume</td> | <td>head volume</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | ||
</tr> | </tr> | ||
| Line 93: | Line 93: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>tadpole volume</td> | <td>tadpole volume</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | ||
</tr> | </tr> | ||
| Line 102: | Line 102: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>skin volume</td> | <td>skin volume</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | ||
</tr> | </tr> | ||
| Line 111: | Line 111: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>receptor compartment volume</td> | <td>receptor compartment volume</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | ||
</tr> | </tr> | ||
| Line 120: | Line 120: | ||
<a name="permeabilities"></a> | <a name="permeabilities"></a> | ||
<center> | <center> | ||
| - | <table id=" | + | <table id="param"><tr> |
<th>Parameter</th> | <th>Parameter</th> | ||
<th>Value</th> | <th>Value</th> | ||
| Line 132: | Line 132: | ||
<tr> | <tr> | ||
<td>P<sub>X<->Y</sub></td> | <td>P<sub>X<->Y</sub></td> | ||
| - | <td>10 | + | <td>10<sup>-5</sup></td> |
<td>cm.min<sup>-1</sup></td> | <td>cm.min<sup>-1</sup></td> | ||
| - | <td>permeability between | + | <td>permeability between tissues X and Y</td> |
| - | <td>- | + | <td> - </td> |
<td><a href="#perm">[3]</a></td> | <td><a href="#perm">[3]</a></td> | ||
</tr> | </tr> | ||
| Line 160: | Line 160: | ||
<td>cm<sup>2</sup></td> | <td>cm<sup>2</sup></td> | ||
<td>skin internal surface</td> | <td>skin internal surface</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="https://2012.igem.org/Team:Evry/surface">here</a></td> | <td><a href="https://2012.igem.org/Team:Evry/surface">here</a></td> | ||
</tr> | </tr> | ||
| Line 175: | Line 175: | ||
<th>Unit</th> | <th>Unit</th> | ||
<th>Description</th> | <th>Description</th> | ||
| - | |||
<th>reference</th> | <th>reference</th> | ||
</tr> | </tr> | ||
| Line 185: | Line 184: | ||
<td>nm</td> | <td>nm</td> | ||
<td>auxin diameter</td> | <td>auxin diameter</td> | ||
| - | + | ||
<td><a href="#keggaux">[2]</a></td> | <td><a href="#keggaux">[2]</a></td> | ||
</tr> | </tr> | ||
Revision as of 02:42, 27 September 2012
During the tadpole's development the value of some parameters may changes, that is why we always (when known) specify the development stage at which the parameter has been estimated.
Tadpole's shape
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| L | 0.8 | cm | tail length | 47 | [1] |
| l | 0.07 | cm | max tail width | 47 | [1] |
| r | 0.3 | cm | head radius | 47 | [1] |
| Tskin | 35 | μm | skin thickness | 47 | [1] |
Volumes
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Vtail | 0.0010 | cm3 | tail volume | 47 | here |
| Vhead | 0.1131 | cm3 | head volume | 47 | here |
| V | 0.1141 | cm3 | tadpole volume | 47 | here |
| Vskin | 0.0041 | cm3 | skin volume | 47 | here |
| Vreceptor | xxxx | cm3 | receptor compartment volume | 47 | here |
Permeabilities
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| PX<->Y | 10-5 | cm.min-1 | permeability between tissues X and Y | - | [3] |
Surfaces
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Sskin | 1.1839 | cm2 | skin internal surface | 47 | here |
Auxin constants
| Parameter | Value | Unit | Description | reference |
|---|---|---|---|---|
| Dauxin | 0.766 | nm | auxin diameter | [2] |
References
References:
- Atlas of xenopus development,G. Bernardini, Springer, 1999.
- Kegg auxin's entry
- Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.
