Team:Colombia/Parts

From 2012.igem.org

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[[File:TA_BioBricks1.png|center|700px]]
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[[File:TA_BioBricks1-2.png|center|550px]]
== Our Composite Parts ==
== Our Composite Parts ==
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[[File:TA_BioBricks2.png|center|700px]]
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[[File:TA_BioBricks3.png|center|550px]]
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'''The links to our BioBricks are'''
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='''We send all this parts to the Registry!!!! '''=
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[http://partsregistry.org/Part:BBa_K831000:Design HipA7]
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[http://partsregistry.org/Part:BBa_K831003:Design TisB]
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[http://partsregistry.org/Part:BBa_K831001:Design HipB]
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[http://partsregistry.org/Part:BBa_K831002:Design MqsA]
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[http://partsregistry.org/Part:BBa_K831004:Design ''istR'' ]
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== Ralstonia: ==
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[http://partsregistry.org/Part:BBa_K831015 prm-''hipA7'']
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[http://partsregistry.org/Part:BBa_K831009 plac-''hipB'']
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[http://partsregistry.org/Part:BBa_K831007 ptetR-''mqsR'']
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[http://partsregistry.org/Part:BBa_K831014  plac-''istR'']
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[[File:ralral.png|center|700px]]
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== '''Ralstonia:''' ==
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[[File:Ralstoniaparts.png|center|550px]]
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'''pchS:'''
 
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'''pchS:''' It encodes a histidine kinase sensor of a two-component signal transduction system. Responds to threshold concentrations of the Quorum Sensing unusual signal 3-OH PAME.
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'''pchR:'''
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'''pchR:''' Receptor of a two-component signal transduction system. Responds to threshold concentrations of the Quorum Sensing unusual signal 3-OH PAME. It is an atypical response regulator that has a histidine kinase as its output domain. Autophosphorilation after 3OH-PAME recognition may have en effect in phcA activation.
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'''pchA:'''
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'''pchA:'''LysR-type transcriptional regulator that controls expression of many genes and is induced in a density manner, relying on the unusual Quorum Sensing signal 3OH-PAME.
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'''PxpcR:'''
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[http://partsregistry.org/Part:BBa_K831016 '''PxpsR:'''] Promoter region of xpsR (PxpsR) wich integrates different signals including phcA. Expression of genes regulated by XpsR may be correlated with threshold concentrations of 3 OH-PAME.
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== Alivibrio ==
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[http://partsregistry.org/Part:BBa_K831017 '''PxpsR-eYFP:'''] Fluorescent Reporter to asses the response of PxpsR to different concentrations of 3OH-PAME.
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[[File:alis.png|center|500x300px|]]
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== ''Aliivibrio fischeri'' ==
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'''ChiP:'''
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[[File:alis.png|center|500px|]]
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'''ChiA:'''
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The overall model can be seen in figures in [https://2012.igem.org/Team:Colombia/Project/Experiments/Aliivibrio_and_Streptomyces the main page of Aliivibrio/Streptomyces.]
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'''ChiS:'''
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'''chiP:''' [http://www.ncbi.nlm.nih.gov/gene/3279194 Chitoporin] is a specific channel that allows N-acetylglucosamine dimers to cross the outer membrane to the periplasmic space,
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'''CBP:'''
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'''chiA:''' [http://www.ncbi.nlm.nih.gov/gene/3277358 Chitinase] is an hydrolase that cleaves the glycosidic bonds on the chitin polymer.
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'''chiS:''' [http://www.ncbi.nlm.nih.gov/gene/3279287 The histidine-kinase sensor] is part of a two-component signalling system, that activates a promoter, in this case pChitin.
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== Alert System: ==
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'''cbp:''' [http://www.ncbi.nlm.nih.gov/gene/3279341 Chitin-binding protein] is able to bind the N-acetyl glucosamine dimers in the periplasmic space. The complex CBP+(GlcNAc)2 serves as an activator of the signalling from chiS to the promoter.
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[[File:alertd.png|center|500x300px|]]
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'''PChitin:''' This 100bp region upstream of chiP is thought to be activated by the activation of chiS.
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'''LuxI:'''
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== Alert System: ==
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'''LuxR:'''
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'''CI:'''
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'''Salicylic Acid:'''
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[[File:Cutandpasteparts.png|center|600px]]
</div>
</div>

Latest revision as of 01:42, 27 October 2012

Template:Https://2012.igem.org/User:Tabima

Contents

Parts

Toxin- Antitoxin (TA) Modules

Our Basic Parts

TA BioBricks1-2.png


Our Composite Parts

TA BioBricks3.png

We send all this parts to the Registry!!!!

[http://partsregistry.org/Part:BBa_K831000:Design HipA7] [http://partsregistry.org/Part:BBa_K831003:Design TisB] [http://partsregistry.org/Part:BBa_K831001:Design HipB] [http://partsregistry.org/Part:BBa_K831002:Design MqsA] [http://partsregistry.org/Part:BBa_K831004:Design istR ]

[http://partsregistry.org/Part:BBa_K831015 prm-hipA7] [http://partsregistry.org/Part:BBa_K831009 plac-hipB] [http://partsregistry.org/Part:BBa_K831007 ptetR-mqsR] [http://partsregistry.org/Part:BBa_K831014 plac-istR]

Ralstonia:

Ralstoniaparts.png


pchS: It encodes a histidine kinase sensor of a two-component signal transduction system. Responds to threshold concentrations of the Quorum Sensing unusual signal 3-OH PAME.

pchR: Receptor of a two-component signal transduction system. Responds to threshold concentrations of the Quorum Sensing unusual signal 3-OH PAME. It is an atypical response regulator that has a histidine kinase as its output domain. Autophosphorilation after 3OH-PAME recognition may have en effect in phcA activation.

pchA:LysR-type transcriptional regulator that controls expression of many genes and is induced in a density manner, relying on the unusual Quorum Sensing signal 3OH-PAME.

[http://partsregistry.org/Part:BBa_K831016 PxpsR:] Promoter region of xpsR (PxpsR) wich integrates different signals including phcA. Expression of genes regulated by XpsR may be correlated with threshold concentrations of 3 OH-PAME.

[http://partsregistry.org/Part:BBa_K831017 PxpsR-eYFP:] Fluorescent Reporter to asses the response of PxpsR to different concentrations of 3OH-PAME.

Aliivibrio fischeri

Alis.png

The overall model can be seen in figures in the main page of Aliivibrio/Streptomyces.

chiP: [http://www.ncbi.nlm.nih.gov/gene/3279194 Chitoporin] is a specific channel that allows N-acetylglucosamine dimers to cross the outer membrane to the periplasmic space,

chiA: [http://www.ncbi.nlm.nih.gov/gene/3277358 Chitinase] is an hydrolase that cleaves the glycosidic bonds on the chitin polymer.

chiS: [http://www.ncbi.nlm.nih.gov/gene/3279287 The histidine-kinase sensor] is part of a two-component signalling system, that activates a promoter, in this case pChitin.

cbp: [http://www.ncbi.nlm.nih.gov/gene/3279341 Chitin-binding protein] is able to bind the N-acetyl glucosamine dimers in the periplasmic space. The complex CBP+(GlcNAc)2 serves as an activator of the signalling from chiS to the promoter.

PChitin: This 100bp region upstream of chiP is thought to be activated by the activation of chiS.

Alert System:

Cutandpasteparts.png