Team:Amsterdam/achievements/stochastic model definition
From 2012.igem.org
Stochastic model definition
This is the definition of the stochastic model which is discussed on this page.
Reaction | Propensity |
---|---|
$ \text{R}_{2}\text{O} \rightarrow \text{R}_{2}\text{O} + \text{M}_{\text{FP}} $ |
$ \text{R}_{2}\text{O} \cdot \text{k}_{\text{s0MFP}} $ |
$ \text{M}_{\text{FP}} \rightarrow \text{M}_{\text{FP}} + \text{FP} $ |
$ \text{k}_{\text{sFP}} \cdot \text{M}_{\text{FP}} $ |
$ \oslash \rightarrow \text{PlasU} $ |
$ k_{\text{Plas}} \cdot (\frac{\text{PlasM} + \text{PlasU}}{Ca})$ |
$ \text{FP} \rightarrow \oslash $ |
$ \lambda_{\text{FP}} \cdot \text{FP} $ |
$ \text{M}_{\text{FP}} \rightarrow \oslash $ |
$ \lambda_{\text{MFP}} \cdot \text{M}_{\text{FP}} $ |
$ \text{PlasU} \rightarrow \text{PlasM} $ |
$ \frac{\text{k}_{\text{cFP}}}{\text{N}_{\text{A}} \cdot \text{V}_{\text{Ecoli}}} \cdot \text{FP} \cdot \text{PlasU} $ |
$ \text{PlasU} \rightarrow \oslash $ |
$ \lambda_{\text{Plas}} \cdot \text{PlasU} $ |
$ \text{PlasM} \rightarrow \oslash $ |
$ \lambda_{\text{Plas}} \cdot \text{PlasM} $ |
Parameter | Value |
---|---|
$ \text{Ca} $ |
$ 200 $ |
$ \text{N}_{\text{A}} $ |
$ 6.0221367 $ |
$ \text{V}_{\text{Ecoli}} $ |
$ 8 $ |
$ \text{k}_{\text{s0MFP}} $ |
$ 0.01$ |
$ \text{k}_{\text{sFP}} $ |
$ 30 $ |
$ \lambda_{\text{MFP}} $ |
$ 0.462 $ |
$ \lambda_{\text{FP}} $ |
$ 0.2 $ |
$ \text{k}_{\text{cFP}} $ |
$ 0.0005 $ |
$ \text{k}_{\text{Plas}} $ |
$ 0.00866434 $ |
$ \lambda_{\text{Plas}} $ |
$ 0.00866434 $ |
Species name | Initial value |
---|---|
$ \text{PlasM} $ |
$ 0 $ |
$ \text{PlasU} $ |
$ 200 $ |
$ \text{FP} $ |
$ 0 $ |
$ \text{M}_{\text{FP}} $ |
$ 0 $ |