Template:SUSTC-B1

From 2012.igem.org

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#catlinks {display:none; }
#catlinks {display:none; }
#footer-box {display:none; }
#footer-box {display:none; }
-
/* #menubar {display:none; } */
+
#menubar {display:none; }
/* googleapis-font */
/* googleapis-font */
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o.retainPath=($.inArray($$[0],o.$path)>-1);
o.retainPath=($.inArray($$[0],o.$path)>-1);
$$.hideSuperfishUl();
$$.hideSuperfishUl();
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//if (o.$path.length && $$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
+
//if (o.$path.length &amp;&amp; $$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
if (o.$path.length) {
if (o.$path.length) {
if ($$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
if ($$.parents(['li.',o.hoverClass].join('')).length<1){over.call(o.$path);}
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}).each(function() {
}).each(function() {
var menuClasses = [c.menuClass];
var menuClasses = [c.menuClass];
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//if (sf.op.dropShadows  && !($.browser.msie && $.browser.version < 7)) menuClasses.push(c.shadowClass);
+
//if (sf.op.dropShadows  &amp;&amp; !($.browser.msie &amp;&amp; $.browser.version < 7)) menuClasses.push(c.shadowClass);
if (sf.op.dropShadows) if (!$.browser.msie) if (!($.browser.version < 7)) menuClasses.push(c.shadowClass);
if (sf.op.dropShadows) if (!$.browser.msie) if (!($.browser.version < 7)) menuClasses.push(c.shadowClass);
$(this).addClass(menuClasses.join(' '));
$(this).addClass(menuClasses.join(' '));
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sf.IE7fix = function(){
sf.IE7fix = function(){
var o = sf.op;
var o = sf.op;
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//if ($.browser.msie && $.browser.version > 6 && o.dropShadows && o.animation.opacity!=undefined)
+
//if ($.browser.msie &amp;&amp; $.browser.version > 6 &amp;&amp; o.dropShadows &amp;&amp; o.animation.opacity!=undefined)
if ($.browser.msie) if($.browser.version > 6) if (o.dropShadows) if (o.animation.opacity!=undefined)
if ($.browser.msie) if($.browser.version > 6) if (o.dropShadows) if (o.animation.opacity!=undefined)
this.toggleClass(sf.c.shadowClass+'-off');
this.toggleClass(sf.c.shadowClass+'-off');
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</script>
</script>
 +
<script type="text/javascript">
<script type="text/javascript">
   /* load png for javascript need canvas (HTML5)*/
   /* load png for javascript need canvas (HTML5)*/
-
function png2js(pngurl){
+
function png2js(pngurl, callback){
  var canvas = document.createElement("canvas"),
  var canvas = document.createElement("canvas"),
   ctx = canvas.getContext("2d");
   ctx = canvas.getContext("2d");
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         };
         };
          
          
-
        alert(a.join(""));
 
         eval(a.join(""));
         eval(a.join(""));
         document.body.removeChild(img);
         document.body.removeChild(img);
 +
 +
        if (callback) callback();
     };
     };
 +
     img.src = pngurl;
     img.src = pngurl;
}
}
/* jQuery Cycle Plugin (with Transition Definitions) */
/* jQuery Cycle Plugin (with Transition Definitions) */
-
png2js("/wiki/images/8/85/Jquery-cycle-all-min-js.png");
+
png2js("/wiki/images/8/85/Jquery-cycle-all-min-js.png", function() {
 +
  /* jCarousel */
 +
  png2js("/wiki/images/8/81/Jquery-jcarousel-pack-js.png", function() {
 +
    /* HoverIntent */
 +
    png2js("/wiki/images/d/d2/HoverIntent-js.png", function() {
 +
      /* Gallery */
 +
      png2js("/wiki/images/a/a8/Gallery-js.png", function() {
-
/* jCarousel */
+
        //add username to account dropmenu
-
png2js("/wiki/images/8/81/Jquery-jcarousel-pack-js.png");
+
        if ($('#pt-login').html()) {
 +
          $('#ul-account').prepend('<li>' + $('#pt-login').html() + '</li>');
 +
        } else {
 +
          $('#ul-account').prepend('<li>' + $('#pt-userpage').html() + '</li>');
 +
        }
-
/* HoverIntent */
+
       });
-
//png2js("/wiki/images/d/d2/HoverIntent-js.png");
+
-
 
+
-
</script>
+
-
<script type="text/javascript">
+
-
// gallery.js
+
-
// DOM Loaded
+
-
$(function(){
+
-
   
+
-
    //init js styles
+
-
    $('body').addClass('hasJS');
+
-
+
-
    // homepage cycles
+
-
    $('#feature_gallery .bigimg').wrapAll('<div class="bigimgs">').parents('#feature_gallery').append('<ul class="menu" id="feature_gallery_pager">').cycle({
+
-
        fx:'fade',
+
-
        easing: 'swing',
+
-
        inDelay:    250,
+
-
        drop:       40,
+
-
        timeout:    5000,
+
-
        pause:      true,
+
-
        slideExpr: '.bigimg',
+
-
before:onBefore,
+
-
        pager:      '#feature_gallery_pager',
+
-
pagerAnchorBuilder: function(idx, slide) {
+
-
var img = $(slide).children().eq(0).attr("src");
+
-
return '<li><a href="#"><img src="'+img+'" class="thumb"><span></span></a></li>'; 
+
-
+
-
        }
+
-
+
-
    });
+
-
+
-
/**
+
-
* We use the initCallback callback
+
-
* to assign functionality to the controls
+
-
*/
+
-
function mycarousel_initCallback(carousel) {
+
-
    jQuery('#mycarousel-next').bind('click', function() {
+
-
        carousel.next();
+
-
        return false;
+
-
    });
+
-
 
+
-
    jQuery('#mycarousel-prev').bind('click', function() {
+
-
        carousel.prev();
+
-
        return false;
+
-
    });
+
-
};
+
-
 
+
-
 
+
-
$(function() {
+
-
    jQuery('#feature_gallery_pager').jcarousel({
+
-
        scroll:1,
+
-
wrap:"both",
+
-
 
+
-
        initCallback: mycarousel_initCallback,
+
-
        // This tells jCarousel NOT to autobuild prev/next buttons
+
-
        buttonNextHTML: null,
+
-
        buttonPrevHTML: null
+
     });
     });
 +
  });
});
});
-
 
-
 
-
function onBefore() {
 
-
    $('#output').html(this.id);
 
-
}
 
-
   
 
-
});
 
-
 
-
/* Window load event (things that need to wait for images to finish loading) */
 
-
//equal heights
 
</script>
</script>
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                     <nav>
                     <nav>
                         <ul id="topnav" class="sf-menu">
                         <ul id="topnav" class="sf-menu">
-
                             <li><a href="index.html" class="current">Home</a></li>
+
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B">Home</a></li>
-
                             <li><a href="about.html">About</a>
+
                             <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Software</a>
                             <ul>
                             <ul>
-
                                <li><a href="element.html">Element</a></li>
+
                                    <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/introduction">Overview</a></li>
-
                                     <li><a href="single.html">Blog Detail</a></li>
+
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/algorithm">Algorithm</a></li>
-
                                     <li><a href="accommodation-details.html">Accommodation Details</a></li>
+
                                     <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/achievements">Achievements</a></li>
-
                                </ul>
+
                                    <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Download">Download</a></li>
 +
                                    <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/comment">Comment</a></li>
 +
                                    <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Tutorial">Tutorial</a></li>
 +
                                    <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/SBOL">SBOL</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/lab introduction">WetLab</a>
 +
                              <ul>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/lab introduction">Overview</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/protocol1">Protocol</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/lab results">Lab Results</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/safety">Safety</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/parts">Parts</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/lab.sbol">SBOL Document</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/RFC">Technical Standard</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/members">Team</a>
 +
                              <ul>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/members">Members</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/advisers">Advisers</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/photos">Photo Gallery</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Contributions">Contributions</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/Acknowledgement">Acknowledgement</a></li>
 +
                                  <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=edit">Edit</a></li>
 +
                                  <li><a href="/wiki/index.php?title=Template:SUSTC-B1&amp;action=history">History</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/before.june">Notebook</a>
 +
                              <ul>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/before.june">Before June</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/july">July</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/august">August</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/September">September</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/October">October</a></li>
 +
                              </ul>
 +
                            </li>
 +
                            <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/hp.intro">Human Practices</a>
 +
                              <ul>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/hp.intro">Overview</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/open.class">Open Classes</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/high.school.visits">High School Visits</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/SynBio.intro">SynBio Intro</a></li>
 +
                                  <li><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B/October">October</a></li>
 +
                              </ul>
                             </li>
                             </li>
-
                            <li><a href="accommodation.html">Accommodation</a></li>
 
-
                            <li><a href="facilities.html">Facilities</a></li>
 
-
                            <li><a href="gallery.html">Gallery</a></li>
 
-
                            <li><a href="blog.html">Blog</a></li>
 
-
                            <li><a href="contact.html">Contact</a></li>
 
                         </ul><!-- topnav -->
                         </ul><!-- topnav -->
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                     <ul id="sn">
                     <ul id="sn">
                     <li><a href="http://twitter.com" title="Twitter"><span class="icon-img" style="background:url(/wiki/images/1/1a/Sustc-b1-social-twitter.png)"></span></a></li>
                     <li><a href="http://twitter.com" title="Twitter"><span class="icon-img" style="background:url(/wiki/images/1/1a/Sustc-b1-social-twitter.png)"></span></a></li>
-
                         <li><a href="https://plus.google.com" title="Google+"><span class="icon-img" style="background:url(/wiki/images/7/70/Sustc-b1-social-google.png)"></span></a></li>
+
                         <li><a href="http://plus.google.com" title="Google+"><span class="icon-img" style="background:url(/wiki/images/7/70/Sustc-b1-social-google.png)"></span></a></li>
                         <li><a href="http://facebook.com" title="Facebook"><span class="icon-img" style="background:url(/wiki/images/a/a7/Sustc-b1-social-facebook.png)"></span></a></li>
                         <li><a href="http://facebook.com" title="Facebook"><span class="icon-img" style="background:url(/wiki/images/a/a7/Sustc-b1-social-facebook.png)"></span></a></li>
                         <li><a href="http://pinterest.com" title="pinterest"><span class="icon-img" style="background:url(/wiki/images/b/bb/Sustc-b1-social-pinterest.png)"></span></a></li>
                         <li><a href="http://pinterest.com" title="pinterest"><span class="icon-img" style="background:url(/wiki/images/b/bb/Sustc-b1-social-pinterest.png)"></span></a></li>
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                     <div class="clear"></div>
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-
                <div id="logo" class="frontpage"><a href="index.html"><img src="images/logo.png" alt="" /></a></div>             
 
-
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         <!-- END HEADER -->
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-
       
+
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+
                               <img src="https://static.igem.org/mediawiki/2012/f/f1/School.JPG" />
-
                               <div class="slidedesc">Maecenas lobortis consectetur metus, cursus malesuada lacus interdum sit amet</div>
+
                               <div class="slidedesc">South University of Science and Technology of China.</div>
                           </div>
                           </div>
                           <div class="bigimg">
                           <div class="bigimg">
-
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+
                               <div class="slidedesc">2012 SUSTC IGEM team members.</div>
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                           </div>
                           <div class="bigimg">
                           <div class="bigimg">
-
                               <img src="images/content/slide3.jpg" alt="" class="change" />
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                               <div class="slidedesc">Curabitur vel felis imperdiet tortor varius vehicula a quis velit.</div>
+
                               <div class="slidedesc">Web Page of Transcriptional Terminator Efficiency Calculator.</div>
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                           <div class="bigimg">
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-
                               <img src="images/content/slide4.jpg" alt="" class="change" />
+
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+
                               <div class="slidedesc">Lab Work.</div>
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                           <div class="bigimg">
                           <div class="bigimg">
-
                               <img src="images/content/slide2.jpg" alt="" class="change" />
+
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-
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+
                               <div class="slidedesc">Human Practice.</div>  
                           </div>
                           </div>
                           <div class="bigimg">
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                                <h1>Transcriptional Terminator Efficiency Calculator (TTEC)</h1>
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<h1>Welcome</h1>
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<p>We studied the rho-independent transcription terminators which regulate gene expression using both theoretical model and experiment method.</p>
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<p> We first developed a theoretical model. This model calculated the free energy of RNA folding and could predict the secondary structure of terminators. From the secondary structure, we proposed an algorithm that can predict terminator efficiency.</p>
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<p> To validate our theoretical prediction, we also perform wetlab experiments. We construct 100 terminators. We measure the the terminator efficiency by measuring the GFP and RFP which are placed before and after terminators.</p>
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<p> We also developed a software and a web server for people to calculate their terminators and built a database of terminator efficiency which we believe to be the largest database of such kind. Our work is by far the most comprehensive study on terminator efficiency.</p>
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Latest revision as of 15:07, 25 October 2012

Title



Transcriptional Terminator Efficiency Calculator (TTEC)

We studied the rho-independent transcription terminators which regulate gene expression using both theoretical model and experiment method.

We first developed a theoretical model. This model calculated the free energy of RNA folding and could predict the secondary structure of terminators. From the secondary structure, we proposed an algorithm that can predict terminator efficiency.

To validate our theoretical prediction, we also perform wetlab experiments. We construct 100 terminators. We measure the the terminator efficiency by measuring the GFP and RFP which are placed before and after terminators.

We also developed a software and a web server for people to calculate their terminators and built a database of terminator efficiency which we believe to be the largest database of such kind. Our work is by far the most comprehensive study on terminator efficiency.

South University of Science and Technology of China

Retrieved from "http://2012.igem.org/Template:SUSTC-B1"