Team:University College London/Week11Yanika

From 2012.igem.org

The first digest was carried out in order to prepare the Upstream Part for ligation through an EcoRI-HF™ and SpeI preparative digest:


Ingredient Amount
Upstream Part Plasmid 500 ng
EcoRI-HF 1 µl
Spel 1 µl
10X NEBuffer 2 5 µl
100X BSA 0.5 µl
H2O to 50 µl


Another digest was carried out in order to prepare the downstream DNA for ligation through an XbaI/PstI preparative digest:


Ingredient Amount
Downstream Part Plasmid 500 ng
Xbal 1 µl
Pstl 1 µl
10X NEBuffer 2 5 µl
100X BSA 0.5 µl
H2O to 50 µl


Another digest was carried out to prepare the backbone plasmid through an EcoRI-HF/PstI preparative digest:


Ingredient Amount
Destination Plasmid 500 ng
EcoRI-HF 1 µl
PstI 1 µl
10X NEBuffer 2.5 µl
100X BSA 0.5 µl
H2O to 50 µl

For each of the digests above, incubate all three restriction digest reactions at 37°C for 10 minutes and then heat inactivate at 80°C for 20 minutes.


Ligate the Upstream and Downstream Parts into the digested Destination Plasmid, using the following:


Ingredient Amount
Upstream Part digestion 2 µl
Destination Plasmid digestion 2 µl
10X T4 DNA Ligase Buffer 2 µl
T4 DNA Ligase 2 µl
H2O 11 µl


After this is prepared, incubate at room temperature for 10 minutes and then heat inactivate at 80°C for 20 minutes.