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Team:NTU-Taida/Modeling/Parameters - Revision history
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Revision history for this page on the wiki
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Charlotte torng: /* Cell-Cell Communication Model */
2012-10-26T20:51:53Z
<p><span class="autocomment">Cell-Cell Communication Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> FA Diffusion Constant</td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> FA Diffusion Constant</td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 6.46 \times 10^{-10}\text{m}^2\text{s}^{-1} \)</td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 6.46 \times 10^{-10}\text{m}^2\text{s}^{-1} \)</td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> <ins class="diffchange diffchange-inline">[9]</ins></td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:51:28Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> FA Diffusion Constant </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> FA Diffusion Constant </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 6.46 \times 10^{-10}~\text{m}^2\text{s}^{-1} \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 6.46 \times 10^{-10}~\text{m}^2\text{s}^{-1} \) </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> <del class="diffchange diffchange-inline"> </del></td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> <ins class="diffchange diffchange-inline">[9] </ins></td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:50:25Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \(50~\text{U}\text{mL}^{-1} \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \(50~\text{U}\text{mL}^{-1} \) </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> [8] </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> [8<ins class="diffchange diffchange-inline">][10][11</ins>] </td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Reference */
2012-10-26T20:50:00Z
<p><span class="autocomment">Reference</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> [8] Bengt Borgstrom, Luminal Digestion of Fats, Handbook of Physiology, The Gastrointestinal System, Intestinal Absorption and Secretion, 1991 <br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> [8] Bengt Borgstrom, Luminal Digestion of Fats, Handbook of Physiology, The Gastrointestinal System, Intestinal Absorption and Secretion, 1991 <br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> [9] Sallee VL, Dietschy JM., Determinants of intestinal mucosal uptake of short- and medium-chain fatty acids and alcohols, Journal of Lipid Research, 1973 <br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> [9] Sallee VL, Dietschy JM., Determinants of intestinal mucosal uptake of short- and medium-chain fatty acids and alcohols, Journal of Lipid Research, 1973 <br></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"> [10] J Keller, P Layer, Human pancreatic exocrine response to nutrients in health and disease, Gut, 2005 <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"> [11] M Lingumsky, E Granot, D Branski, H Stankiewicz, R Goldstein, Isolated lipase and colipase deficiency in two brothers, Gut, 1990 <br></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{:Team:NTU-Taida/Templates/ContentEnd}}{{:Team:NTU-Taida/Templates/Footer|ActiveNavbar=Modeling, #nav-Modeling-Parameters}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{:Team:NTU-Taida/Templates/ContentEnd}}{{:Team:NTU-Taida/Templates/Footer|ActiveNavbar=Modeling, #nav-Modeling-Parameters}}</div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:38:58Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \([E]_t \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \([E]_t \) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \(50~\U\text{mL}^{-1} \) </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \(50~\<ins class="diffchange diffchange-inline">text{</ins>U<ins class="diffchange diffchange-inline">}</ins>\text{mL}^{-1} \) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [8] </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [8] </td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:37:59Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \([E]_t \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \([E]_t \) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Total active enzyme </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \(50~\<del class="diffchange diffchange-inline">mu</del>\text{<del class="diffchange diffchange-inline">M</del>} \) </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \(50~\<ins class="diffchange diffchange-inline">U</ins>\text{<ins class="diffchange diffchange-inline">mL}^{-1</ins>} \) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [8] </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [8] </td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Cell-Cell Communication Model */
2012-10-26T20:35:06Z
<p><span class="autocomment">Cell-Cell Communication Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( cd \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( cd \) </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> E. coli Cell Density </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> <ins class="diffchange diffchange-inline">Relative </ins>E. coli Cell Density </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 0.1 \) </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( 0.1 \) </td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:32:38Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( K_{cat}\)</td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( K_{cat}\)</td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \(1.3\times10^{-5}\text{<del class="diffchange diffchange-inline">s</del>}^{-1}\) </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \(1.3\times10^{-5}\text{<ins class="diffchange diffchange-inline">min</ins>}^{-1}\) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td></tr>
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Charlotte torng
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Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:32:00Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( K_{cat}\)</td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> \( K_{cat}\)</td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \(1.3\times10^{-5}\) </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \(1.3\times10^{-5<ins class="diffchange diffchange-inline">}\text{s}^{-1</ins>}\) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td></tr>
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Charlotte torng
http://2012.igem.org/wiki/index.php?title=Team:NTU-Taida/Modeling/Parameters&diff=289223&oldid=prev
Charlotte torng: /* Fatty Acid Reaction Absorption Model */
2012-10-26T20:28:38Z
<p><span class="autocomment">Fatty Acid Reaction Absorption Model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <tr></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <tr></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \( K_{cat<del class="diffchange diffchange-inline">}/\text{molecular weight</del>} \)</td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \( K_{cat}\)</td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> Catalytic Rate constant </td></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <td> \(1.<del class="diffchange diffchange-inline">8</del>\times10^{-<del class="diffchange diffchange-inline">3</del>}\) </td></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <td> \(1.<ins class="diffchange diffchange-inline">3</ins>\times10^{-<ins class="diffchange diffchange-inline">5</ins>}\) </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <td> [6][7] </td></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </tr></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </tr></div></td></tr>
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Charlotte torng