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Team:Groningen/Notebook/Modeling 3August2012 - Revision history
2024-03-28T20:04:33Z
Revision history for this page on the wiki
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Jparrish at 14:54, 26 September 2012
2012-09-26T14:54:28Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> Updated the main modeling page.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <ins class="diffchange diffchange-inline"><b></ins>Updated the main modeling page.<ins class="diffchange diffchange-inline"></b></ins></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"> </del>1. Found a review article on integrating regulatory networks:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>1. Found a review article on integrating regulatory networks:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <br></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <del class="diffchange diffchange-inline">* </del>L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <del class="diffchange diffchange-inline">* </del>J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"> <br></del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <A HREF="https://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <A HREF="https://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A></div></td></tr>
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Jparrish
http://2012.igem.org/wiki/index.php?title=Team:Groningen/Notebook/Modeling_3August2012&diff=122398&oldid=prev
Jparrish at 00:10, 18 September 2012
2012-09-18T00:10:45Z
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Jparrish
http://2012.igem.org/wiki/index.php?title=Team:Groningen/Notebook/Modeling_3August2012&diff=117656&oldid=prev
Jparrish at 15:26, 15 September 2012
2012-09-15T15:26:58Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"># </del>Updated the main modeling page.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <body></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"># </del>Found a review article on integrating regulatory networks:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <p class="margin"></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">#</del>*L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>Updated the main modeling page.</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"># </del>From the review article, it looks like the PROM technique can be extended using idFBA.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">#</del>* J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> 1. </ins>Found a review article on integrating regulatory networks:</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>* <ins class="diffchange diffchange-inline"> </ins>L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> 2. </ins>From the review article, it looks like the PROM technique can be extended using idFBA.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins>* <ins class="diffchange diffchange-inline"> </ins>J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.</div></td></tr>
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Jparrish
http://2012.igem.org/wiki/index.php?title=Team:Groningen/Notebook/Modeling_3August2012&diff=57458&oldid=prev
Jparrish at 14:46, 3 August 2012
2012-08-03T14:46:02Z
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Jparrish
http://2012.igem.org/wiki/index.php?title=Team:Groningen/Notebook/Modeling_3August2012&diff=57456&oldid=prev
Jparrish: Created page with "{{Header Groningen}} # Updated the main modeling page. # Found a review article on integrating regulatory networks: #*L. Cloots and K. Marchal, “Network-based functional mode..."
2012-08-03T14:45:38Z
<p>Created page with "{{Header Groningen}} # Updated the main modeling page. # Found a review article on integrating regulatory networks: #*L. Cloots and K. Marchal, “Network-based functional mode..."</p>
<p><b>New page</b></p><div>{{Header Groningen}}<br />
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# Updated the main modeling page.<br />
# Found a review article on integrating regulatory networks:<br />
#*L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.<br />
# From the review article, it looks like the PROM technique can be extended using idFBA.<br />
#* J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.</div>
Jparrish