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Team:Groningen/Notebook/Modeling 31July2012
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| - | Great headway towards implementing a transcription-regulation network into the FBA model. | + | <body> |
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| - | + | Great headway towards implementing a transcription-regulation network into the FBA model. | |
| - | + | <br> | |
| - | + | 1. I've identified sources for the network | |
| + | <a href="http://dbtbs.hgc.jp/"><font color=#ff6700>DBTBS</font></a> | ||
| + | <a href="http://regprecise.lbl.gov/RegPrecise/collection_taxspec.jsp?collection_id=5"><font color=#ff6700>RegPrecise</font></a> | ||
| + | <br> | ||
| + | 2. I've identified sources for expression data | ||
| + | <a href="http://www.genome.jp/kegg/expression/"><font color=#ff6700>KEGG</font></a> | ||
| + | <a href="http://bacillus.genome.ad.jp/"><font color=#ff6700>BSORF</font></a> | ||
| + | <br> | ||
| + | 3. I'm halfway through analyzing the script from the debut PROM article. | ||
| + | <a href="http://www.pnas.org/content/107/41/17845"><font color=#ff6700>Link</font></a> | ||
| + | <br> | ||
| + | <br> | ||
S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010. | S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010. | ||
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| + | <A HREF="https://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A> | ||
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Revision as of 16:28, 15 September 2012
Great headway towards implementing a transcription-regulation network into the FBA model.
1. I've identified sources for the network
DBTBS
RegPrecise
2. I've identified sources for expression data
KEGG
BSORF
3. I'm halfway through analyzing the script from the debut PROM article.
Link
S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.
Back to notebook
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