Team:Groningen/Modeling

From 2012.igem.org

(Difference between revisions)
m
Line 13: Line 13:
-
If you choose to include a '''Modeling''' page, please write about your modeling adventures here. This is not necessary but it may be a nice list to include.
+
'''Modeling Targets'''
 +
<br>
 +
'''''Germination'''''
 +
# Effects of h2o and L-alanine concentrations on germination rate.
 +
'''''Volatile production'''''
 +
# Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)
 +
'''''Normal operation'''''
 +
# Receptor sensitivities
 +
#* Binding rate as a function of volatile concentration (TAAR5)
 +
# Diffusion rates
 +
#* Through the membrane (nh4_diffusion, h_diffusion)
 +
#* Through ion channels (nh4_ion)
 +
# Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
 +
# Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
 +
# Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
 +
# Opacity as a function of lycopene concentration
 +
'''''OMIX visualization through reaction pathways'''''

Revision as of 17:35, 10 May 2012

Home Team Official Team Profile Public Relations Project Parts Submitted to the Registry Modeling Notebook Safety Attributions


Modeling Targets
Germination

  1. Effects of h2o and L-alanine concentrations on germination rate.

Volatile production

  1. Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)

Normal operation

  1. Receptor sensitivities
    • Binding rate as a function of volatile concentration (TAAR5)
  2. Diffusion rates
    • Through the membrane (nh4_diffusion, h_diffusion)
    • Through ion channels (nh4_ion)
  3. Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
  4. Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
  5. Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
  6. Opacity as a function of lycopene concentration

OMIX visualization through reaction pathways