Team:Copenhagen

From 2012.igem.org

(Difference between revisions)
Line 15: Line 15:
     </div>
     </div>
-
    <script type="text/javascript">
 
-
  $(window).load(function() {
 
-
        $('#slider').nivoSlider();
 
-
    });
 
-
    </script>
 
-
/*
 
-
* jQuery Nivo Slider v2.6
 
-
* http://nivo.dev7studios.com
 
-
*
 
-
* Copyright 2011, Gilbert Pellegrom
 
-
* Free to use and abuse under the MIT license.
 
-
* http://www.opensource.org/licenses/mit-license.php
 
-
*
 
-
* March 2010
 
-
*/
 
-
 
-
(function($){var NivoSlider=function(element,options){var settings=$.extend({},$.fn.nivoSlider.defaults,options);var vars={currentSlide:0,currentImage:'',totalSlides:0,randAnim:'',running:false,paused:false,stop:false};var slider=$(element);slider.data('nivo:vars',vars);slider.css('position','relative');slider.addClass('nivoSlider');var kids=slider.children();kids.each(function(){var child=$(this);var link='';if(!child.is('img')){if(child.is('a')){child.addClass('nivo-imageLink');link=child;}
 
-
child=child.find('img:first');}
 
-
var childWidth=child.width();if(childWidth==0)childWidth=child.attr('width');var childHeight=child.height();if(childHeight==0)childHeight=child.attr('height');if(childWidth>slider.width()){slider.width(childWidth);}
 
-
if(childHeight>slider.height()){slider.height(childHeight);}
 
-
if(link!=''){link.css('display','none');}
 
-
child.css('display','none');vars.totalSlides++;});if(settings.startSlide>0){if(settings.startSlide>=vars.totalSlides)settings.startSlide=vars.totalSlides-1;vars.currentSlide=settings.startSlide;}
 
-
if($(kids[vars.currentSlide]).is('img')){vars.currentImage=$(kids[vars.currentSlide]);}else{vars.currentImage=$(kids[vars.currentSlide]).find('img:first');}
 
-
if($(kids[vars.currentSlide]).is('a')){$(kids[vars.currentSlide]).css('display','block');}
 
-
slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');slider.append($('<div class="nivo-caption"><p></p></div>').css({display:'none',opacity:settings.captionOpacity}));var processCaption=function(settings){var nivoCaption=$('.nivo-caption',slider);if(vars.currentImage.attr('title')!=''&&vars.currentImage.attr('title')!=undefined){var title=vars.currentImage.attr('title');if(title.substr(0,1)=='#')title=$(title).html();if(nivoCaption.css('display')=='block'){nivoCaption.find('p').fadeOut(settings.animSpeed,function(){$(this).html(title);$(this).fadeIn(settings.animSpeed);});}else{nivoCaption.find('p').html(title);}
 
-
nivoCaption.fadeIn(settings.animSpeed);}else{nivoCaption.fadeOut(settings.animSpeed);}}
 
-
processCaption(settings);var timer=0;if(!settings.manualAdvance&&kids.length>1){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}
 
-
if(settings.directionNav){slider.append('<div class="nivo-directionNav"><a class="nivo-prevNav">'+settings.prevText+'</a><a class="nivo-nextNav">'+settings.nextText+'</a></div>');if(settings.directionNavHide){$('.nivo-directionNav',slider).hide();slider.hover(function(){$('.nivo-directionNav',slider).show();},function(){$('.nivo-directionNav',slider).hide();});}
 
-
$('a.nivo-prevNav',slider).live('click',function(){if(vars.running)return false;clearInterval(timer);timer='';vars.currentSlide-=2;nivoRun(slider,kids,settings,'prev');});$('a.nivo-nextNav',slider).live('click',function(){if(vars.running)return false;clearInterval(timer);timer='';nivoRun(slider,kids,settings,'next');});}
 
-
if(settings.controlNav){var nivoControl=$('<div class="nivo-controlNav"></div>');slider.append(nivoControl);for(var i=0;i<kids.length;i++){if(settings.controlNavThumbs){var child=kids.eq(i);if(!child.is('img')){child=child.find('img:first');}
 
-
if(settings.controlNavThumbsFromRel){nivoControl.append('<a class="nivo-control" rel="'+i+'"><img src="'+child.attr('rel')+'" alt="" /></a>');}else{nivoControl.append('<a class="nivo-control" rel="'+i+'"><img src="'+child.attr('src').replace(settings.controlNavThumbsSearch,settings.controlNavThumbsReplace)+'" alt="" /></a>');}}else{nivoControl.append('<a class="nivo-control" rel="'+i+'">'+(i+1)+'</a>');}}
 
-
$('.nivo-controlNav a:eq('+vars.currentSlide+')',slider).addClass('active');$('.nivo-controlNav a',slider).live('click',function(){if(vars.running)return false;if($(this).hasClass('active'))return false;clearInterval(timer);timer='';slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');vars.currentSlide=$(this).attr('rel')-1;nivoRun(slider,kids,settings,'control');});}
 
-
if(settings.keyboardNav){$(window).keypress(function(event){if(event.keyCode=='37'){if(vars.running)return false;clearInterval(timer);timer='';vars.currentSlide-=2;nivoRun(slider,kids,settings,'prev');}
 
-
if(event.keyCode=='39'){if(vars.running)return false;clearInterval(timer);timer='';nivoRun(slider,kids,settings,'next');}});}
 
-
if(settings.pauseOnHover){slider.hover(function(){vars.paused=true;clearInterval(timer);timer='';},function(){vars.paused=false;if(timer==''&&!settings.manualAdvance){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}});}
 
-
slider.bind('nivo:animFinished',function(){vars.running=false;$(kids).each(function(){if($(this).is('a')){$(this).css('display','none');}});if($(kids[vars.currentSlide]).is('a')){$(kids[vars.currentSlide]).css('display','block');}
 
-
if(timer==''&&!vars.paused&&!settings.manualAdvance){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}
 
-
settings.afterChange.call(this);});var createSlices=function(slider,settings,vars){for(var i=0;i<settings.slices;i++){var sliceWidth=Math.round(slider.width()/settings.slices);if(i==settings.slices-1){slider.append($('<div class="nivo-slice"></div>').css({left:(sliceWidth*i)+'px',width:(slider.width()-(sliceWidth*i))+'px',height:'0px',opacity:'0',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((sliceWidth+(i*sliceWidth))-sliceWidth)+'px 0%'}));}else{slider.append($('<div class="nivo-slice"></div>').css({left:(sliceWidth*i)+'px',width:sliceWidth+'px',height:'0px',opacity:'0',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((sliceWidth+(i*sliceWidth))-sliceWidth)+'px 0%'}));}}}
 
-
var createBoxes=function(slider,settings,vars){var boxWidth=Math.round(slider.width()/settings.boxCols);var boxHeight=Math.round(slider.height()/settings.boxRows);for(var rows=0;rows<settings.boxRows;rows++){for(var cols=0;cols<settings.boxCols;cols++){if(cols==settings.boxCols-1){slider.append($('<div class="nivo-box"></div>').css({opacity:0,left:(boxWidth*cols)+'px',top:(boxHeight*rows)+'px',width:(slider.width()-(boxWidth*cols))+'px',height:boxHeight+'px',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((boxWidth+(cols*boxWidth))-boxWidth)+'px -'+((boxHeight+(rows*boxHeight))-boxHeight)+'px'}));}else{slider.append($('<div class="nivo-box"></div>').css({opacity:0,left:(boxWidth*cols)+'px',top:(boxHeight*rows)+'px',width:boxWidth+'px',height:boxHeight+'px',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((boxWidth+(cols*boxWidth))-boxWidth)+'px -'+((boxHeight+(rows*boxHeight))-boxHeight)+'px'}));}}}}
 
-
var nivoRun=function(slider,kids,settings,nudge){var vars=slider.data('nivo:vars');if(vars&&(vars.currentSlide==vars.totalSlides-1)){settings.lastSlide.call(this);}
 
-
if((!vars||vars.stop)&&!nudge)return false;settings.beforeChange.call(this);if(!nudge){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}else{if(nudge=='prev'){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}
 
-
if(nudge=='next'){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}}
 
-
vars.currentSlide++;if(vars.currentSlide==vars.totalSlides){vars.currentSlide=0;settings.slideshowEnd.call(this);}
 
-
if(vars.currentSlide<0)vars.currentSlide=(vars.totalSlides-1);if($(kids[vars.currentSlide]).is('img')){vars.currentImage=$(kids[vars.currentSlide]);}else{vars.currentImage=$(kids[vars.currentSlide]).find('img:first');}
 
-
if(settings.controlNav){$('.nivo-controlNav a',slider).removeClass('active');$('.nivo-controlNav a:eq('+vars.currentSlide+')',slider).addClass('active');}
 
-
processCaption(settings);$('.nivo-slice',slider).remove();$('.nivo-box',slider).remove();if(settings.effect=='random'){var anims=new Array('sliceDownRight','sliceDownLeft','sliceUpRight','sliceUpLeft','sliceUpDown','sliceUpDownLeft','fold','fade','boxRandom','boxRain','boxRainReverse','boxRainGrow','boxRainGrowReverse');vars.randAnim=anims[Math.floor(Math.random()*(anims.length+1))];if(vars.randAnim==undefined)vars.randAnim='fade';}
 
-
if(settings.effect.indexOf(',')!=-1){var anims=settings.effect.split(',');vars.randAnim=anims[Math.floor(Math.random()*(anims.length))];if(vars.randAnim==undefined)vars.randAnim='fade';}
 
-
vars.running=true;if(settings.effect=='sliceDown'||settings.effect=='sliceDownRight'||vars.randAnim=='sliceDownRight'||settings.effect=='sliceDownLeft'||vars.randAnim=='sliceDownLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceDownLeft'||vars.randAnim=='sliceDownLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);slice.css({'top':'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
 
-
timeBuff+=50;i++;});}
 
-
else if(settings.effect=='sliceUp'||settings.effect=='sliceUpRight'||vars.randAnim=='sliceUpRight'||settings.effect=='sliceUpLeft'||vars.randAnim=='sliceUpLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceUpLeft'||vars.randAnim=='sliceUpLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);slice.css({'bottom':'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
 
-
timeBuff+=50;i++;});}
 
-
else if(settings.effect=='sliceUpDown'||settings.effect=='sliceUpDownRight'||vars.randAnim=='sliceUpDown'||settings.effect=='sliceUpDownLeft'||vars.randAnim=='sliceUpDownLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var v=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceUpDownLeft'||vars.randAnim=='sliceUpDownLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);if(i==0){slice.css('top','0px');i++;}else{slice.css('bottom','0px');i=0;}
 
-
if(v==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
 
-
timeBuff+=50;v++;});}
 
-
else if(settings.effect=='fold'||vars.randAnim=='fold'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;$('.nivo-slice',slider).each(function(){var slice=$(this);var origWidth=slice.width();slice.css({top:'0px',height:'100%',width:'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({width:origWidth,opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({width:origWidth,opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
 
-
timeBuff+=50;i++;});}
 
-
else if(settings.effect=='fade'||vars.randAnim=='fade'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':slider.width()+'px'});firstSlice.animate({opacity:'1.0'},(settings.animSpeed*2),'',function(){slider.trigger('nivo:animFinished');});}
 
-
else if(settings.effect=='slideInRight'||vars.randAnim=='slideInRight'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':'0px','opacity':'1'});firstSlice.animate({width:slider.width()+'px'},(settings.animSpeed*2),'',function(){slider.trigger('nivo:animFinished');});}
 
-
else if(settings.effect=='slideInLeft'||vars.randAnim=='slideInLeft'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':'0px','opacity':'1','left':'','right':'0px'});firstSlice.animate({width:slider.width()+'px'},(settings.animSpeed*2),'',function(){firstSlice.css({'left':'0px','right':''});slider.trigger('nivo:animFinished');});}
 
-
else if(settings.effect=='boxRandom'||vars.randAnim=='boxRandom'){createBoxes(slider,settings,vars);var totalBoxes=settings.boxCols*settings.boxRows;var i=0;var timeBuff=0;var boxes=shuffle($('.nivo-box',slider));boxes.each(function(){var box=$(this);if(i==totalBoxes-1){setTimeout(function(){box.animate({opacity:'1'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){box.animate({opacity:'1'},settings.animSpeed);},(100+timeBuff));}
 
-
timeBuff+=20;i++;});}
 
-
else if(settings.effect=='boxRain'||vars.randAnim=='boxRain'||settings.effect=='boxRainReverse'||vars.randAnim=='boxRainReverse'||settings.effect=='boxRainGrow'||vars.randAnim=='boxRainGrow'||settings.effect=='boxRainGrowReverse'||vars.randAnim=='boxRainGrowReverse'){createBoxes(slider,settings,vars);var totalBoxes=settings.boxCols*settings.boxRows;var i=0;var timeBuff=0;var rowIndex=0;var colIndex=0;var box2Darr=new Array();box2Darr[rowIndex]=new Array();var boxes=$('.nivo-box',slider);if(settings.effect=='boxRainReverse'||vars.randAnim=='boxRainReverse'||settings.effect=='boxRainGrowReverse'||vars.randAnim=='boxRainGrowReverse'){boxes=$('.nivo-box',slider)._reverse();}
 
-
boxes.each(function(){box2Darr[rowIndex][colIndex]=$(this);colIndex++;if(colIndex==settings.boxCols){rowIndex++;colIndex=0;box2Darr[rowIndex]=new Array();}});for(var cols=0;cols<(settings.boxCols*2);cols++){var prevCol=cols;for(var rows=0;rows<settings.boxRows;rows++){if(prevCol>=0&&prevCol<settings.boxCols){(function(row,col,time,i,totalBoxes){var box=$(box2Darr[row][col]);var w=box.width();var h=box.height();if(settings.effect=='boxRainGrow'||vars.randAnim=='boxRainGrow'||settings.effect=='boxRainGrowReverse'||vars.randAnim=='boxRainGrowReverse'){box.width(0).height(0);}
 
-
if(i==totalBoxes-1){setTimeout(function(){box.animate({opacity:'1',width:w,height:h},settings.animSpeed/1.3,'',function(){slider.trigger('nivo:animFinished');});},(100+time));}else{setTimeout(function(){box.animate({opacity:'1',width:w,height:h},settings.animSpeed/1.3);},(100+time));}})(rows,prevCol,timeBuff,i,totalBoxes);i++;}
 
-
prevCol--;}
 
-
timeBuff+=100;}}}
 
-
var shuffle=function(arr){for(var j,x,i=arr.length;i;j=parseInt(Math.random()*i),x=arr[--i],arr[i]=arr[j],arr[j]=x);return arr;}
 
-
var trace=function(msg){if(this.console&&typeof console.log!="undefined")
 
-
console.log(msg);}
 
-
this.stop=function(){if(!$(element).data('nivo:vars').stop){$(element).data('nivo:vars').stop=true;trace('Stop Slider');}}
 
-
this.start=function(){if($(element).data('nivo:vars').stop){$(element).data('nivo:vars').stop=false;trace('Start Slider');}}
 
-
settings.afterLoad.call(this);return this;};$.fn.nivoSlider=function(options){return this.each(function(key,value){var element=$(this);if(element.data('nivoslider'))return element.data('nivoslider');var nivoslider=new NivoSlider(this,options);element.data('nivoslider',nivoslider);});};$.fn.nivoSlider.defaults={effect:'random',slices:15,boxCols:8,boxRows:4,animSpeed:500,pauseTime:3000,startSlide:0,directionNav:true,directionNavHide:true,controlNav:true,controlNavThumbs:false,controlNavThumbsFromRel:false,controlNavThumbsSearch:'.jpg',controlNavThumbsReplace:'_thumb.jpg',keyboardNav:true,pauseOnHover:true,manualAdvance:false,captionOpacity:0.8,prevText:'Prev',nextText:'Next',beforeChange:function(){},afterChange:function(){},slideshowEnd:function(){},lastSlide:function(){},afterLoad:function(){}};$.fn._reverse=[].reverse;})(jQuery);
 
<br>
<br>

Revision as of 13:36, 30 July 2012

iGEM 2012: Copenhagen



Welcome to Team Copenhagen 2012!! In this years project we will produce a construct that allows cyanobacteria to emit light when exposed to darkness for an extended period of time. The advantage of using cyanobacteria over other model organisms, such as E. coli, is that cyanobacteria do not require glucose for growth, but fixate CO2 in the atmosphere. Promoters that are normally controlling genes involved in the circadian rhythm of cyanobacteria will, in our construct, be associated with a luciferase gene casette containing all the enzymes necessary for the deployment of biologically generated light. The result is a sustainable system in which cyanobacteria per day will synthesize the components necessary for the production of light during periods with light and consume them in darkness under emission of light.

Copenhagen Official Team Profile

Sponsors