Team:Colombia/Modeling/Stochastic

From 2012.igem.org

(Difference between revisions)
(Stochastic Model)
(Stochastic Model)
Line 5: Line 5:
== '''Stochastic Model''' ==
== '''Stochastic Model''' ==
-
 
-
 
-
Now we are going to explain to you how we implement the Gilliespie method to introduce stochasticity to our math model.
 
-
The complete method consists of eight steps.
 
-
1. Define the number of cells.//
 
-
2. Define the time of the simulation
 
-
3. Define and name all the constants involved.
 
-
4. Define creation and destruction expression for each substance involved.
 
-
5. Apply Gilliespie algorithm.
 
-
            a. Calculate the sample space of the analysed system.
 
-
 
-
            b. Calculate time distribution that depends on a random number between 0 and 1.
 
-
 
-
            c. Generate ranges for the space created in the step 5.a, taking into account the random number from step 5.b. After that, assign an answer to each range.
 
-
6. Take the outputs from the simulation and convert them into regular interval vectors.
 
-
7. Obtain the Gilliespie function mean values.
 
-
8. Plot the obtained functions.
 

Revision as of 02:20, 17 September 2012

Template:Https://2012.igem.org/User:Tabima



Stochastic Model