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Team/CINVESTAV-IPN-UNAM MX/perspectives.htm
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<li><a href="promoterselection.htm">Promoter selection </a></li> | <li><a href="promoterselection.htm">Promoter selection </a></li> | ||
<li><a href="results.htm">results </a></li> | <li><a href="results.htm">results </a></li> | ||
| - | <li><a href="perspectives.htm">Perspectives</a></li> | + | <li class="active"><a href="perspectives.htm">Perspectives</a></li> |
| - | <li | + | <li><a href="Modelling.htm">Modeling</a></li> |
<li><a href="aboutus.htm">About us</a> </li> | <li><a href="aboutus.htm">About us</a> </li> | ||
| - | <li><a href=" | + | <li><a href="outreach.htm">outreach</a></li> |
</ul> | </ul> | ||
</div> | </div> | ||
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<p>With the valuable collaboration of the team iGEM-Alberta 2008, we linked the light-oxygen | <p>With the valuable collaboration of the team iGEM-Alberta 2008, we linked the light-oxygen | ||
dependent regulation systems with the butanol production pathway and its electron-transfer-flavoprotein | dependent regulation systems with the butanol production pathway and its electron-transfer-flavoprotein | ||
| - | alpha and betha polypeptides, these constructs were donated by Dr. Douglas Ridgway. (Reference: | + | alpha and betha polypeptides, these constructs were donated by Dr. Douglas Ridgway.<br /> (Reference: |
| - | https://2008.igem.org/Team:The_University_of_Alberta/Butanerd) | + | <a href="https://2008.igem.org/Team:The_University_of_Alberta/Butanerd" target="_blank">https://2008.igem.org/Team:The_University_of_Alberta/Butanerd</a>) |
</p> | </p> | ||
| - | <p>Clostridium acetobutylicum is an anaerobic, spore-forming bacterium with the ability to ferment | + | <p><em>Clostridium acetobutylicum</em> is an anaerobic, spore-forming bacterium with the ability to ferment |
starch and sugars into solvents. In the past, it has been used for industrial production of acetone and | starch and sugars into solvents. In the past, it has been used for industrial production of acetone and | ||
butanol, until cheap crude oil rendered petrochemical synthesis more economically feasible. Both economic | butanol, until cheap crude oil rendered petrochemical synthesis more economically feasible. Both economic | ||
and environmental aspects have caused the pendulum to swing back again. Molecular biology has allowed | and environmental aspects have caused the pendulum to swing back again. Molecular biology has allowed | ||
a detailed understanding of genes and enzymes, required for solventogenesis.(1) | a detailed understanding of genes and enzymes, required for solventogenesis.(1) | ||
| - | Taking advantage of the metabolic versatility of R. sphearoides and R. palustris and their ability to fix | + | Taking advantage of the metabolic versatility of <em>R. sphearoides</em> and <em>R. palustris</em> and their ability to fix |
Carbon dioxide, we aim to introduce the following constructions into these both bacteria so that the fixed | Carbon dioxide, we aim to introduce the following constructions into these both bacteria so that the fixed | ||
carbon dioxide becomes into butanol.</p> | carbon dioxide becomes into butanol.</p> | ||
| Line 255: | Line 272: | ||
</div> | </div> | ||
<p><br> | <p><br> | ||
| - | (A) | + | (A) The regulation part of the Repressor/Antirepressor system linked with the ETFA (electron- |
transfer-flavoprotein, alpha polypeptide) and the ETFB (electron-transfer-flavoprotein, beta | transfer-flavoprotein, alpha polypeptide) and the ETFB (electron-transfer-flavoprotein, beta | ||
polypeptide) (ETFA/B).</p> | polypeptide) (ETFA/B).</p> | ||
| Line 261: | Line 278: | ||
</div> | </div> | ||
<p><br> | <p><br> | ||
| - | (B) | + | (B) This biobrick is the production part of the complete |
Repressor/Antirepressor system, consists in the PpsR dependent promoter sequence liked with the | Repressor/Antirepressor system, consists in the PpsR dependent promoter sequence liked with the | ||
butanol production pathway.</p> | butanol production pathway.</p> | ||
<div align="center"><img src="https://static.igem.org/mediawiki/2012/b/b7/PerC.jpg" alt="perc" width="763" height="165"></div> | <div align="center"><img src="https://static.igem.org/mediawiki/2012/b/b7/PerC.jpg" alt="perc" width="763" height="165"></div> | ||
<p><br> | <p><br> | ||
| - | (C) | + | (C) The regulation part of the two component system PrrABC linked |
with ETFA/B.</p> | with ETFA/B.</p> | ||
<div align="center"><img src="https://static.igem.org/mediawiki/2012/1/12/PerD.jpg" width="764" height="142"> | <div align="center"><img src="https://static.igem.org/mediawiki/2012/1/12/PerD.jpg" width="764" height="142"> | ||
</div> | </div> | ||
| - | <p>(D) | + | <p>(D) This biobrick is the production part of the complete Two component PrrABC |
system, consists in the PrrA dependent promoter sequence liked with the butanol production | system, consists in the PrrA dependent promoter sequence liked with the butanol production | ||
pathway. </p> | pathway. </p> | ||
<div align="center"><img src="https://static.igem.org/mediawiki/2012/d/d0/PerE.jpg" width="770" height="180"></div> | <div align="center"><img src="https://static.igem.org/mediawiki/2012/d/d0/PerE.jpg" width="770" height="180"></div> | ||
| - | <p>(E) The PrrABC-ETFA/B system linked with the butanol production pathway.</p> | + | <p>(E) The PrrABC-ETFA/B system linked with the PrrA dependent promoter and the butanol production pathway.</p> |
| - | <p> We have to clone these constructions into the pRK415 vector, and conjugate R. sphearoides and R. palutris, | + | <p> We have to clone these constructions into the pRK415 vector, and conjugate <em>R. sphearoides</em> and <em>R. palutris</em>, |
to finally test our system and the butanol production.</p> | to finally test our system and the butanol production.</p> | ||
<hr> | <hr> | ||
| - | <p id="refe">References | + | |
| - | 1.- Ann N Y Acad ‘Sci., Dürre P., Fermentative butanol production: bulk chemical and biofuel. | + | <p id="refe">References<br> |
| + | |||
| + | 1.- Ann N Y Acad ‘Sci., Dürre P., <strong>Fermentative butanol production: bulk chemical and biofuel.</strong> | ||
(2008) Mar;1125:353-62.<br> | (2008) Mar;1125:353-62.<br> | ||
| - | 2.- Cong T. Trinh, Elucidating and reprogramming Escherichia coli metabolisms for obligate | + | 2.- Cong T. Trinh, <strong>Elucidating and reprogramming <em>Escherichia coli</em> metabolisms for obligate anaerobic n-butanol and isobutanol production</strong> Appl Microbiol Biotechnol DOI 10.1007/s00253-012- |
| - | + | ||
4197-7<br> | 4197-7<br> | ||
| - | 3.- Masayuki Inui & Masako Suda & Sakurako Kimura & Kaori Yasuda & Hiroaki Suzuki & Hiroshi Toda & | + | 3.- Masayuki Inui & Masako Suda & Sakurako Kimura & Kaori Yasuda & Hiroaki Suzuki & Hiroshi Toda & Shogo Yamamoto & Shohei Okino & Nobuaki Suzuki & Hideaki Yukawa <strong>Expression of <em>Clostridium acetobutylicum</em> butanol synthetic genes in <em>Escherichia coli</em></strong> Appl Microbiol Biotechnol (2008) |
| - | + | ||
| - | acetobutylicum butanol synthetic genes in Escherichia coli Appl Microbiol Biotechnol (2008) | + | |
77:1305–1316<br> | 77:1305–1316<br> | ||
| - | 4.- Wolfram Andersch, Hubert Bahl, and Gerhard Gottschalk Level of Enzymes Involved in Acetate, | + | 4.- Wolfram Andersch, Hubert Bahl, and Gerhard Gottschalk <strong>Level of Enzymes Involved in Acetate, Butyrate, Acetone and Butanol Formation by <em>Clostridium acetobutylicum</em></strong> Eur J Appl Microbiol |
| - | Butyrate, Acetone and Butanol Formation by Clostridium acetobutylicum Eur J Appl Microbiol | + | |
Biotechnol (1983) 18:327-332<br> | Biotechnol (1983) 18:327-332<br> | ||
| - | 5.- Hubert Bahl, Wolfram Andersch, and Gerhard Gottschalk, Continuous | + | 5.- Hubert Bahl, Wolfram Andersch, and Gerhard Gottschalk, <strong>Continuous |
| - | Production of Acetone and Butanol by Clostridium acetobutylicum in a | + | Production of Acetone and Butanol by <em>Clostridium acetobutylicum</em> in a Two-Stage Phosphate Limited Chemostat</strong> European J Appl Microbiol Biotechnol (1982) 15:201-205</p> |
| - | + | ||
</div> | </div> | ||
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Latest revision as of 21:03, 26 October 2012
Perspectives!
With the valuable collaboration of the team iGEM-Alberta 2008, we linked the light-oxygen
dependent regulation systems with the butanol production pathway and its electron-transfer-flavoprotein
alpha and betha polypeptides, these constructs were donated by Dr. Douglas Ridgway.
(Reference:
https://2008.igem.org/Team:The_University_of_Alberta/Butanerd)
Clostridium acetobutylicum is an anaerobic, spore-forming bacterium with the ability to ferment starch and sugars into solvents. In the past, it has been used for industrial production of acetone and butanol, until cheap crude oil rendered petrochemical synthesis more economically feasible. Both economic and environmental aspects have caused the pendulum to swing back again. Molecular biology has allowed a detailed understanding of genes and enzymes, required for solventogenesis.(1) Taking advantage of the metabolic versatility of R. sphearoides and R. palustris and their ability to fix Carbon dioxide, we aim to introduce the following constructions into these both bacteria so that the fixed carbon dioxide becomes into butanol.
We constructed the following circuits:
(A) The regulation part of the Repressor/Antirepressor system linked with the ETFA (electron-
transfer-flavoprotein, alpha polypeptide) and the ETFB (electron-transfer-flavoprotein, beta
polypeptide) (ETFA/B).
(B) This biobrick is the production part of the complete
Repressor/Antirepressor system, consists in the PpsR dependent promoter sequence liked with the
butanol production pathway.
(C) The regulation part of the two component system PrrABC linked
with ETFA/B.
(D) This biobrick is the production part of the complete Two component PrrABC system, consists in the PrrA dependent promoter sequence liked with the butanol production pathway.
(E) The PrrABC-ETFA/B system linked with the PrrA dependent promoter and the butanol production pathway.
We have to clone these constructions into the pRK415 vector, and conjugate R. sphearoides and R. palutris, to finally test our system and the butanol production.
References
1.- Ann N Y Acad ‘Sci., Dürre P., Fermentative butanol production: bulk chemical and biofuel.
(2008) Mar;1125:353-62.
2.- Cong T. Trinh, Elucidating and reprogramming Escherichia coli metabolisms for obligate anaerobic n-butanol and isobutanol production Appl Microbiol Biotechnol DOI 10.1007/s00253-012-
4197-7
3.- Masayuki Inui & Masako Suda & Sakurako Kimura & Kaori Yasuda & Hiroaki Suzuki & Hiroshi Toda & Shogo Yamamoto & Shohei Okino & Nobuaki Suzuki & Hideaki Yukawa Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli Appl Microbiol Biotechnol (2008)
77:1305–1316
4.- Wolfram Andersch, Hubert Bahl, and Gerhard Gottschalk Level of Enzymes Involved in Acetate, Butyrate, Acetone and Butanol Formation by Clostridium acetobutylicum Eur J Appl Microbiol
Biotechnol (1983) 18:327-332
5.- Hubert Bahl, Wolfram Andersch, and Gerhard Gottschalk, Continuous
Production of Acetone and Butanol by Clostridium acetobutylicum in a Two-Stage Phosphate Limited Chemostat European J Appl Microbiol Biotechnol (1982) 15:201-205
Rhodofactory 2012
