Team/CINVESTAV-IPN-UNAM MX/Oxigen Response.htm

From 2012.igem.org

(Difference between revisions)
 
(11 intermediate revisions not shown)
Line 5: Line 5:
<style type="text/css">
<style type="text/css">
 +
 +
#top-section {
 +
position: relative;
 +
height: 20px;
 +
width: 975px;
 +
margin: 0 auto 0 auto;
 +
border-left: hidden;
 +
border-right: hidden;
 +
border-bottom: hidden;
 +
}
* {
* {
Line 12: Line 22:
body {
body {
-
background: #FFFFFF;
+
background: #FFFFFF url(https://static.igem.org/mediawiki/2012/f/f3/Fondo_bod.jpg) repeat-x;
text-align: justify;
text-align: justify;
font-family: Georgia, "Times New Roman", Times, serif;
font-family: Georgia, "Times New Roman", Times, serif;
Line 252: Line 262:
margin-bottom: .1em;
margin-bottom: .1em;
visibility:hidden;
visibility:hidden;
 +
}
 +
 +
img[src*="/wiki/skins/common/images/wiki.png"]{
 +
    width:0;
 +
    height:0px;
 +
    padding-right:975px;
 +
    background:transparent url(https://2011.igem.org/wiki/skins/common/images/wiki.png) top left no-repeat;
}
}
Line 264: Line 281:
<ul>
<ul>
<li><a href="home.htm">Home</a></li>
<li><a href="home.htm">Home</a></li>
-
<li><a href="rhodofactory.htm">Rhodofactory</a></li>
+
<li class="active"><a href="rhodofactory.htm">Rhodofactory</a></li>
<li><a href="promoterselection.htm">Promoter selection </a></li>
<li><a href="promoterselection.htm">Promoter selection </a></li>
-
<li><a href="#">results </a></li>
+
<li><a href="results.htm">results </a></li>
-
<li><a href="#">Perspectives</a></li>
+
<li><a href="perspectives.htm">Perspectives</a></li>
-
<li class="active"><a href="#">Modeling</a></li>
+
<li><a href="Modelling.htm">Modeling</a></li>
<li><a href="aboutus.htm">About us</a> </li>
<li><a href="aboutus.htm">About us</a> </li>
-
<li><a href="#">outreach</a></li>
+
<li><a href="outreach.htm">outreach</a></li>
</ul>
</ul>
</div>
</div>
Line 282: Line 299:
<div id="context">
<div id="context">
 
 
-
<h1><em>Oxygen Control System: PrrA/PrrB two component regulation system! </em></h1>
+
<h1><em>Oxygen Control System: PrrA/PrrB two <br /><br />component regulation system! </em></h1>
-
            </br>
+
<p>This regulatory system is able to sense oxygen concentration and send a response, under high oxygen tension, the system remains inactive, when oxygen concentration decreases PrrB (Histidine sensor kinase) turns active through an autophosphorylation with help of PrrC, which receive the signal from electron transport chain. Then PrrB transfer a phosphate group to PrrA that directly binds promoter and recruits RNA polymerase to start GFP transcription.
-
<p>Under high oxygen tension, the system remains inactive, when oxygen concentration decreases PrrB (kinase sensor) activates itself
+
 
-
through an autophosphorylation mediated by the electron flux from the electron transport chain through PrrC. Then PrrB transfers the
+
 
-
phosphate group to PrrA response regulator that binds the promoter sequence and recruits the RNA polymerase for promoting GFP
+
(See the next video for a visual explanation).</p>
-
transcription. (See the next video for a visual explanation).</p>
+
<div align="center"><iframe width="480" height="360" src="http://www.youtube.com/embed/pgp6DzpNyA0" frameborder="0" allowfullscreen></iframe></div><br>
<div align="center"><iframe width="480" height="360" src="http://www.youtube.com/embed/pgp6DzpNyA0" frameborder="0" allowfullscreen></iframe></div><br>
<p id="text2">Our biobricks </p>
<p id="text2">Our biobricks </p>
Line 297: Line 313:
<p align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Rodo05.jpg" alt="rodo05" width="450" height="249"></p>
<p align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Rodo05.jpg" alt="rodo05" width="450" height="249"></p>
<p id="text2">We were inspired in:</p>
<p id="text2">We were inspired in:</p>
-
<p>This system is inspired in PrrBCA two component system from Rhodobacter sphaeroides, which is a master regulator involved in expression of
+
<p>This system is inspired in PrrBCA two component system from <em>R. sphaeroides</em>, which is a master regulator involved in expression of
approximately 850 genes, >20% of the genome (Kaplan & Eraso 2005) This system coordinately controls genes involved in the complex switch
approximately 850 genes, >20% of the genome (Kaplan & Eraso 2005) This system coordinately controls genes involved in the complex switch
between aerobic and anaerobic conditions and the optimum use of reducing power. It also regulates gene expression involved in
between aerobic and anaerobic conditions and the optimum use of reducing power. It also regulates gene expression involved in
Line 306: Line 322:
  <p id="refe">References<br>
  <p id="refe">References<br>
  1.
  1.
-
  Kaplan S, Eraso J, Roh JH. (2005). Interacting regulatory networks in the facultative
+
  Kaplan S, Eraso J, Roh JH. (2005). <strong>Interacting regulatory networks in the facultative
-
  photosynthetic bacterium, Rhodobacter sphaeroides 2.4.1. Biochem. Soc. Trans. 33:51–55<br>
+
  photosynthetic bacterium, <em>Rhodobacter sphaeroides</em> 2.4.1.</strong> Biochem. Soc. Trans. 33:51–55<br>
  2.
  2.
-
  Zeilstra-Ryalls JH, Kaplan S. (2004). Oxygen intervention in the regulation of gene xpression: the photosynthetic
+
  Zeilstra-Ryalls JH, Kaplan S. (2004). <strong>Oxygen intervention in the regulation of gene xpression: the photosynthetic
-
  bacterial paradigm. Cell. Mol. Life Sci. 61:417–36<br>
+
  bacterial paradigm.</strong> Cell. Mol. Life Sci. 61:417–36<br>
  3.
  3.
-
  Eraso JM, Kaplan S (2009) Regulation of gene expression by PrrA in Rhodobacter sphaeroides 2.4.1: role of
+
  Eraso JM, Kaplan S (2009) <strong>Regulation of gene expression by PrrA in <em>Rhodobacter sphaeroides</em> 2.4.1: role of
-
  polyamines and DNA topology. J Bacteriol 2009, 191(13):4341-4352.
+
  polyamines and DNA topology.</strong> J Bacteriol 2009, 191(13):4341-4352.
  </p>
  </p>
   
   
Line 335: Line 351:
<!-- end #page -->
<!-- end #page -->
<div id="piedepagina">
<div id="piedepagina">
-
<p align="center"> Rhodofactory 2012 </p>
+
<p align="center"> <strong>Rhodofactory 2012</strong> </p>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="70" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="90" height="82" /></div>
</div>
</div>
<div id="sponsors">
<div id="sponsors">
Line 344: Line 360:
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fb/Bio.png" alt="bio" width="73" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fb/Bio.png" alt="bio" width="80" height="97" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/d/d6/Fermentas.png" alt="fermentAS" width="82" height="45" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/d/d6/Fermentas.png" alt="fermentAS" width="82" height="45" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/a/a3/Cinestav.png" alt="cinestav" width="74" height="99" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/a/a3/Cinestav.png" alt="cinestav" width="74" height="91" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/9/9b/Genscript.png" alt="genscript" width="83" height="45" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/9/9b/Genscript.png" alt="genscript" width="83" height="45" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Unam.png" alt="unam" width="78" height="91" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/1/16/Unam.png" alt="unam" width="83" height="93" /></div>
</div>
</div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/c/c9/Gto.png" alt="gto" width="84" height="46" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/c/c9/Gto.png" alt="gto" width="84" height="46" /></div>
     <div id="sponsors">
     <div id="sponsors">
-
       <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fa/Qimica.png" alt="quimica" width="72" height="80" /></div>
+
       <div align="center"><img src="https://static.igem.org/mediawiki/2012/f/fa/Qimica.png" alt="quimica" width="80" height="72" /></div>
     </div>
     </div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/7/73/Valaner.png" alt="valaner" width="84" height="48" /></div>
<div id="sponsors"><img src="https://static.igem.org/mediawiki/2012/7/73/Valaner.png" alt="valaner" width="84" height="48" /></div>
<div id="sponsors">
<div id="sponsors">
-
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/7/79/Ipn.png" alt="ipn" width="75" height="97" /></div>
+
  <div align="center"><img src="https://static.igem.org/mediawiki/2012/7/79/Ipn.png" alt="ipn" width="70" height="96" /></div>
</div>
</div>

Latest revision as of 00:22, 27 October 2012

Rho

Oxygen Control System: PrrA/PrrB two

component regulation system!

This regulatory system is able to sense oxygen concentration and send a response, under high oxygen tension, the system remains inactive, when oxygen concentration decreases PrrB (Histidine sensor kinase) turns active through an autophosphorylation with help of PrrC, which receive the signal from electron transport chain. Then PrrB transfer a phosphate group to PrrA that directly binds promoter and recruits RNA polymerase to start GFP transcription. (See the next video for a visual explanation).


Our biobricks

The first biobrick consists in the complete oxygen dependent system, PrrA, PrrB and PrrC, each one with a Ribosome Binding Site, under a Medium strength promoter (J23104), this first biobrick also it has the PrrA dependent promoter and GFP as a reporter gene

rodo04


The second biobrick is just the PrrA dependent promoter and GFP as a reporter gene.

rodo05

We were inspired in:

This system is inspired in PrrBCA two component system from R. sphaeroides, which is a master regulator involved in expression of approximately 850 genes, >20% of the genome (Kaplan & Eraso 2005) This system coordinately controls genes involved in the complex switch between aerobic and anaerobic conditions and the optimum use of reducing power. It also regulates gene expression involved in photosynthesis, carbon dioxide fixation, nitrogen fixation, hydrogen uptake, aerotaxis, denitrification, electron transport, aerobic and anaerobic respiration, and heme biosynthesis, and others. Thus emphasizing its global role (Elsen et.al 2004, Kaplan & Eraso 2005, Zeilstra-Ryalls & Kaplan 2004).


References
1. Kaplan S, Eraso J, Roh JH. (2005). Interacting regulatory networks in the facultative photosynthetic bacterium, Rhodobacter sphaeroides 2.4.1. Biochem. Soc. Trans. 33:51–55
2. Zeilstra-Ryalls JH, Kaplan S. (2004). Oxygen intervention in the regulation of gene xpression: the photosynthetic bacterial paradigm. Cell. Mol. Life Sci. 61:417–36
3. Eraso JM, Kaplan S (2009) Regulation of gene expression by PrrA in Rhodobacter sphaeroides 2.4.1: role of polyamines and DNA topology. J Bacteriol 2009, 191(13):4341-4352.

 

Rhodofactory 2012

icytdf
osli
bio
fermentAS
cinestav
genscript
unam
gto
quimica
valaner
ipn