Team:Lyon-INSA/notebook
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Modelling
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Dilution of 100 µL saturated culture in 5 mL LB media.
Incubation time : 2 hours (until O.D =0,3).
Transformation of the NM 522 strain (this experiment was made 3 times)
For the positive control the pSB1C3 plasmid was used ; For the transformation, the pBBA_I742123 was used (well A2, 5th iGEM kit plate) The transformed bacteria were selected on chloramphenicol plates.
- Positive control: lots of colonies
- Negative control: one of the three negative controls was contaminated (the correspondent transformed colonies were not used). No colonies were observed on the other two negative control plates.
- Test plate: between 1 and 8 were observed.
4 liquid cultures (5mL LB media + 50 µL chloramphenicol) and 4 streaked chloramphenicol plates were made using isolated colonies likely to contain transformed bacteria.
The antibiotic resistance (Ampicillin, Tetracyclin, Chloramphenicol and Kanamycin ) of the following strains was tested: BS 168, BS 168 MCherry, BS 168 GFP, BS 168 Lysostaphine, Staphylococcus epidermidis, BS Abrb.
- Bs 168 : no resistance
- Bs 168 M cherry : no resistance
- Bs 168 GFP : no resistance
- Bs abrB : Cm resistant
- Bs 168 lysostaphine PWG100 : no resistance
- S. Epidermidis : Tet resistant
Extraction of 4 clones containing the pBBA_I742123 plasmid. Verification by gel electrophoresis (after EcoR1 digestion)
Terminator was retrieved from the plate 1 well 13D
Long meeting
- pBBa_I742123 was put in storage (under the reference pBK1);
- a liquid culture of NM522/pBK1 transformed cells was made so we could extract more plasmid DNA (50 mL LB media + 500 µL Cloramphenicol + 500 µL liquid culture of transformed bacteria );
- we had the 3 genes coding for lysostaphin, dispersin and lacI repressor in pUC57 Ampicillin resistant plasmid delivered;
- transformation of NM522 strain with pUC57-Lyso, pUC57-Disp and pUC57-sfp;
- 200 µL of each transformed strains were spread on LB media Ampicillin resistant plates liquid cultures of the following strains were made: Bs 168 in BL, Bs abrB in BL media supplemented with Chloramphenicol, S. epidermidis in BL media supplemented with Tetracyclin
- Lysostaphin in pUC57 Amp resistant (pBK2);
- Dispersin in pUC57 Amp resistant (pBK3);
- Surfactin part 2 (RBS-lacI-terminator) dans pUC57 Amp resistant (pBK4)
- S epi on BL + Tet (BK1)
- Bs abrB on BL + Cm (BK2)
- Bs 168 on BL (BK3)
- digestion of pBK2 with the restriction enzymes EcoRI and SpeI;
- digestion of pBK3 with the restriction enzymes PstI and XbaI;
- digestion of pBK4 with the restriction enzymes EcoRI and PstI;
- 3A ligation of the digested parts;
- electrophoresis control showed the expected fragment for lysostaphin and dispersin (2,1 kb). However, the digested backbone plasmid had 3 fragments instead of 2.
Plasmid A2 extraction with a midiprep (pBK5) and digestion → 3 stripes are observed : PROBLEM. Digestion is made again with E, P and E+P → There are 2 Pst1 sites !!! WRONG PLASMID - transformation of NM522 strain with the part BBa_K606061 Chloramphenicol resistant;
- transformation of NM522 strain with the part BBa_B0010 Ampicillin resistant;
- transformation of NM522 strain with the part BBa_K606040 Chloramphenicol resistant;
- design and order of the primers for the constitutive promotor (part BBa_K143012)
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