Notebook - Week 7

Monday June 11

Today we split into various groups and continued researching on our respective topics, such as non-biobrick parts (specifically today was working on potential synthesis pathways) and potential fusion standards. In the afternoon, we continued researching the same topics we did in the morning, while Kevin and Phillip had an interview with the local newspaper, Kingston This Week. Phillip and Kevin also updated the team website, qgemteam.com with this year's content.

Tuesday June 12

Today we again split into various groups and researched our different topics with a particular focus on applications of our project today. We also spent a lot of time doing sponsorship today, and we got our first sponsorship deal! *Insert Fanfare here*. From the Queen's Chemical Engineering department. Phillip also spent a lot of time today working on the wiki, finally getting a clear picture of the navigation menus on the site. Kevin and Faisal had a meeting with one of our advisors, Dr. Campbell, to discuss modelling the chimeric flagellin. We also uploaded the majority of the pictures that we had from yesterday's SynthetiQ work (thanks to Beini for the captions), and while Kevin skyped the inspiration behind SynthetiQ: John Bohannan!

Wednesday June 13

In preparation for the arrival of our primers, which are due to arrive tomorrow, we spent most of our day researching PCR techniques and protocols. In particular, we researched PCR troubleshooting, in case anything goes wrong, which hopefully it will not. During lunch, we went to a workshop in which we received a list of things to make work more fun (if that's even possible), and Andrew hopes to do them all before summer end. In the afternoon, we met with our professors in order to both discuss our progress as well as getting more information on the financial side of our project. In the lab today, we worked on some bacteria art to get some cool pictures for when Kingston This Week will come and take pictures on Friday.

Thursday June 14

Today, we spent most of the day doing research on making our own restriction enzymes and working on sponsorship. We also spent time in the lab today, we did two things: analyze the results of yesterday's bacteria art, which turned out well, and performed Hotstart Ready PCR for GFP and luciferase. After PCR finished, we performed gel electrophoresis on both parts, and based on the results, they both worked.

Friday June 15

In the morning, a photographer from Kingston This Week came to take photos of us for our the article about us. After that, we split into two groups, one in the lab performing PCR for fmT and PbrR, and the other spending more time researching on the creation of our own restriction enzymes and finishing off the discussion about which BioBrick fusion standard to use. At the beginning of the afternoon, we finally heard back from OSLI.....and we got it! Our second sponsor! After that, we split into groups in the lab and worked on gel electrophoresis on GFP and luciferase, others worked on PCRing GFP with linkers and ECFP, and William worked on determining the error on our pipettes. After PCR was finished, Faisal and Kevin performed gel electrophoresis on the remaining two BioBrick parts. In the end, the results showed that PCR worked for fmT and one of the GFP with linker gels showed up. The PCR for PbrR did not work as nothing was shown. The PCR for ECFP showed a lot of gels lower down the ladder. It is possible that the plasmid was not taken up for the lead binding proteins and the ECFP proteins, these two colonies might have to be regrown.