Team:Lyon-INSA/safety
From 2012.igem.org
Safety
We present here our reflexion about safety issues of the “Biofilm Killer” project based on a modified Bacillus subtilis strain able to swarm into biofilms, to produce a biocide agent and a dispersive agent. To obtain genetic constructions, we worked also with an Escherichia coli strain and as a biofilm model with Staphylococcus epidermidis.
Researcher/Public/Environmental Safety
Laboratory experiments always imply handling hazardous substances. And their use can present a risk for the health of the manipulator or for the environment if not stored, used and eliminated in waste properly, according to their toxicity for example. For these reasons: the access of the laboratory was limited to those involved in the project and all work benches were cleaned every day and the whole lab cleaned every week.
CLEAN AREAS TO ENCOURAGE GOOD PRACTICES
Before starting experimental work, we have identified chemical/biological Hazards and Risks. We consider the fact of having a proper training in safety and security at the beginning of our experimental work prepared us to be more organised, responsible for our actions and respectful for those of others. To sum up: GOOD LABORATORY PRACTICES: PROTECT YOURSELF, PROTECT PEOPLE AROUND YOU, PROTECT THE ENVIRONMENT.
Global hazards and risks: Electricity and gas: we have followed all instructions from our institution concerning the lab electrical and gas systems. Emergency numbers are displayed near the phones. Personal protective equipement, including appropriate labcoats, gloves and safety glasses were worn for lab experiments. No one was allowed to work alone in the laboratory. In addition, the French system provide all young adults with a training in first-aid and safety. Moreover, several students, advisors and instructors have the life saving diploma and also have followed a formation for firefighting.
Main chemical hazards and risks: Most of the reagents used are irritant, toxic and can be potential carcinogens (agarose, polyacrylamid, methanol, Ethidium bromide…)
To minimize the impact of their use, they are manipulated following the supplier’s instructions, wearing appropriate personnal safety equipement, i.e. gloves, safety glasses, labcoats and under extractor hood when necessary. All samples, tubes, vials are clearly identified/labelled to avoid inappropriate mix between two non compatible solvents. All reagents are eliminated in the appropriate waste recovered barrels.
We took specific safety measure for the use of Ethidium Bromide (EtBr). Ethidium bromide is known to act as a mutagen because it intercalates whithin the double strand DNA helix. Many biological processes can thus be affected such as transcription and replication. To avoid the dissemination of EtBr in the lab, it is stored and used in the same room where the electrophoresis gels are revealed. EtBr is NEVER incorporated into the electrophoresis gels, but used in staining bath instead to avoid the contamination of electrophoresis equipment. This room is locked by a key. The access to this room is forbidden to any person who does not carry a lab coat. Dedicated gloves are used for EtBr manipulation and must not leave the room. They are discarded in a specific trash barrel for genotoxines contaminated material to gather with stained gels. EtBr-contaminated material is further processed and decontaminated by an external service.
Each room is equipped with labels on each door to inform people of what they may find inside and what safety procedures they need to follow.
Main biological hazards and risks: All Bacillus subtilis, Echerichia coli and Staphylococcus epidermidis strains we used have a biosafety level of 1, which means they are not known to cause disease and have minimal environmental hazards.
At this level the precautions concerning the lab-material are minimal: wearing gloves and face protection when needed. Any contaminated material is discarded in a trash can to be autoclaveded within 2 days. The decontamination procedure is similar to any other applied to frequently encountered virus or bacteria (ex: to wash hands with antibacterial soap, disinfect any surface in the laboratory that has been exposed). Our work benches are decontaminated with ethanol 70% after each manipulation. And contaminated media and materials are autoclaved at least every 2 days to avoid any release in environment.
All the students must have their vaccinations up to date. In case a student harbors an injury, it must be covered so it is not exposed to the bacteria. All rooms are equiped with with a first aid kit. In the building where the labwork was performed, no laboratory is manipulating pathogenic microorganisms, which limits the risks to students, and the recombination possibility between a pathogenic bacteria and the lab strains.
For better protection the following basic safety rules applied for all students during lab work:
CLEAN AREAS TO ENCOURAGE GOOD PRACTICES
Before starting experimental work, we have identified chemical/biological Hazards and Risks. We consider the fact of having a proper training in safety and security at the beginning of our experimental work prepared us to be more organised, responsible for our actions and respectful for those of others. To sum up: GOOD LABORATORY PRACTICES: PROTECT YOURSELF, PROTECT PEOPLE AROUND YOU, PROTECT THE ENVIRONMENT.
Global hazards and risks: Electricity and gas: we have followed all instructions from our institution concerning the lab electrical and gas systems. Emergency numbers are displayed near the phones. Personal protective equipement, including appropriate labcoats, gloves and safety glasses were worn for lab experiments. No one was allowed to work alone in the laboratory. In addition, the French system provide all young adults with a training in first-aid and safety. Moreover, several students, advisors and instructors have the life saving diploma and also have followed a formation for firefighting.
Main chemical hazards and risks: Most of the reagents used are irritant, toxic and can be potential carcinogens (agarose, polyacrylamid, methanol, Ethidium bromide…)
To minimize the impact of their use, they are manipulated following the supplier’s instructions, wearing appropriate personnal safety equipement, i.e. gloves, safety glasses, labcoats and under extractor hood when necessary. All samples, tubes, vials are clearly identified/labelled to avoid inappropriate mix between two non compatible solvents. All reagents are eliminated in the appropriate waste recovered barrels.
We took specific safety measure for the use of Ethidium Bromide (EtBr). Ethidium bromide is known to act as a mutagen because it intercalates whithin the double strand DNA helix. Many biological processes can thus be affected such as transcription and replication. To avoid the dissemination of EtBr in the lab, it is stored and used in the same room where the electrophoresis gels are revealed. EtBr is NEVER incorporated into the electrophoresis gels, but used in staining bath instead to avoid the contamination of electrophoresis equipment. This room is locked by a key. The access to this room is forbidden to any person who does not carry a lab coat. Dedicated gloves are used for EtBr manipulation and must not leave the room. They are discarded in a specific trash barrel for genotoxines contaminated material to gather with stained gels. EtBr-contaminated material is further processed and decontaminated by an external service.
Each room is equipped with labels on each door to inform people of what they may find inside and what safety procedures they need to follow.
Main biological hazards and risks: All Bacillus subtilis, Echerichia coli and Staphylococcus epidermidis strains we used have a biosafety level of 1, which means they are not known to cause disease and have minimal environmental hazards.
At this level the precautions concerning the lab-material are minimal: wearing gloves and face protection when needed. Any contaminated material is discarded in a trash can to be autoclaveded within 2 days. The decontamination procedure is similar to any other applied to frequently encountered virus or bacteria (ex: to wash hands with antibacterial soap, disinfect any surface in the laboratory that has been exposed). Our work benches are decontaminated with ethanol 70% after each manipulation. And contaminated media and materials are autoclaved at least every 2 days to avoid any release in environment.
All the students must have their vaccinations up to date. In case a student harbors an injury, it must be covered so it is not exposed to the bacteria. All rooms are equiped with with a first aid kit. In the building where the labwork was performed, no laboratory is manipulating pathogenic microorganisms, which limits the risks to students, and the recombination possibility between a pathogenic bacteria and the lab strains.
For better protection the following basic safety rules applied for all students during lab work:
- Be aware of the risks and hazards involved in any experiment
- Know where the fire extinguisher, safety shower and general electrical circuit breaker are located in each room
- No food or drink in the laboratory
- Wear a buttoned up lab coat
- Long hair need to be tied back
- Contact lenses are forbidden except if people wear a face protection or safety glasses
- Spillage need to be cleaned up immediately
- Lab benches are cleaned after each experiment
- Technical and safety files are available neat all the lab equipments
- No chemical touching, sniffing or tasting
- No mouth-pipeting
- No returning unused chemicals to their containers
- No hazardous material disposal down the drain
- Bath
- Electrophoresis migration
- Incubators
- Freezer and refrigerator
- Autoclave