Colony PCR

The protocol for this procedure can be found here and MSDS for the reagents used can be found here.

Risks

Bacteria- Depending on the bacteria used in your experiments, the danger associated with exposure will vary. Our laboratory is only authorised to use Biosafety level 1 (non-pathogenic) bacteria and so in our experiments the risk to scientists is minimal. It is however the policy of the department to treat all bacteria as pathogens. This will be increasingly important if pathogenic strains of bacteria are used.

Infection - the risk of infection in our experiment was not of great concern as non-pathogenic strains were used. Gloves and lab coats were still always worn when working with bacteria (this was also to help prevent contamination of samples). Where there is a greater risk masks should also be work to prevent access via the mouth or airways. Despite wearing gloves while working with bacteria, scientists must still wash their hands before leaving the lab to eliminate the chance of contaminating food.

Disposal - Unused bacteria and bacterial waste after PCR has been completed should be disposed of in the biological waste vessels in the laboratory. When full, these vessels are autoclaved and then disposed of in accordance with normal departmental procedures.

Heat- While most PCR is now carried out using specialised machines, it is possible to perform PCR by hand using heat blocks and waterbaths. The high temperatures used in this technique are sufficient to burn the skin so care must be taken when using machinery and transferring samples. The use of tongs or heat proof gloves is recommended in this case.