Team:EPF-Lausanne/Protocol/DNAConcentration

From 2012.igem.org

Revision as of 01:55, 17 September 2012 by Aiourano (Talk | contribs)

Protocol: DNA Concentration Measurement


  • Take a 6 µl aliquote of the DNA and put back the main DNA tube in the fridge.
  • Go to the room by the E.Coli lab (LBTM, not on Friday morning!) with:
    • The 6 µl aliquote
    • A 10 µl pipet
    • Optionally, the buffer you used for DNA elution (there might be some next to the machine).
  • The machine is the NanoDrop Spectrophotometer.
  • On the computer, click on "Nucleic Acid".
  • Put a 2 µl drop of (nuclease-free) water on the machine's tip as you are asked to and measure.
  • Clean tips (both sides) with a quarter of tissue.
  • Add 2 µl of the buffer you use and click on "Blank".
  • Clean tips (both sides).
  • Add 2 µl of your DNA sample and click "Measure".
  • Clean tips (both sides) with a tissue.
  • Take 2 measurements per sample (for averaging).
  • Print the report when you are done
  • Click on exit.

The important numbers are:

  • 260/280 ratio, must be > 1.8
  • 260/230 ratio, must be > 2 (too big, > 2.5? , might mean too much salts)
  • Of course the DNA concentration.