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Team:LMU-Munich/Weekly Journal
From 2012.igem.org
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Jenny presented ''Bacillus'' germination review to the group. We discussed stages of germination & how our mutants would prevent germination from occurring. Discussed possible germination causes besides nutrients, and how to hopefully prevent them. We realized partial germination caused by biochemical reactions from nutrients might cause the spores to deform, even if they did not complete germination. Therefore Jenny began research on this possibility. | Jenny presented ''Bacillus'' germination review to the group. We discussed stages of germination & how our mutants would prevent germination from occurring. Discussed possible germination causes besides nutrients, and how to hopefully prevent them. We realized partial germination caused by biochemical reactions from nutrients might cause the spores to deform, even if they did not complete germination. Therefore Jenny began research on this possibility. | ||
| + | Clean deletions of germination genes ''sleB'' and ''cwlB'' from PCR accomplished. DNA purified and frozen to be later transformed with ''Bacillus''. | ||
<html><a><img src="https://static.igem.org/mediawiki/2012/7/78/BacillusBioBrickBox.png" height=40"/></a></html> β-galactosidase assays of the promoters P<sub>''liaG''</sub>, P<sub>''liaI''</sub> and P<sub>''veg''</sub> are finished. Look at Data! | <html><a><img src="https://static.igem.org/mediawiki/2012/7/78/BacillusBioBrickBox.png" height=40"/></a></html> β-galactosidase assays of the promoters P<sub>''liaG''</sub>, P<sub>''liaI''</sub> and P<sub>''veg''</sub> are finished. Look at Data! | ||
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'''11-15 June 2012''' | '''11-15 June 2012''' | ||
| + | <html><a href="https://2012.igem.org/Team:LMU-Munich/Germination_Stop"> | ||
| + | <img src="https://static.igem.org/mediawiki/2012/f/f6/GerminationSTOP.png" height=40"/></a></html> | ||
| + | Clean deletions of germination genes ''cwlD'', ''cwlJ'', and ''gerD'' from PCR accomplished. DNA purified and frozen to be later transformed with ''Bacillus''. | ||
'''4-8 June 2012''' | '''4-8 June 2012''' | ||
Revision as of 10:50, 4 September 2012
The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".
[ more news ]
Weekly Journal
Legend:
| +--+--+--+--+--+-- | +--+--+--+--+-- | +--+--+--+--+--+-- | +--+--+--+--+--+-- |
|
Bacillus BioBrickBOX |
SporeCoat FusionProteins |
Germination STOP |
| 3-7 September 2012
| ||
| 26-31 August 2012 | ||
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| Finally, we got our first glowing spore!! After 4 months of hard work we have our first proof that our system works. | 
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| 20-24 August 2012 | ||
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| Double negative loop with lacZa finished -> works qualitatively (Julia)
| |
| 13-17 August 2012
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| 6-10 August 2012 | ||
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| We created double-mutant using resistance-cassettes to knock out germination genes as follows: cwlD::kanamycin + gerD::chloramphenicol
| |
| 30 July - 3 August 2012 | ||
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| ||
| 23-27 July 2012 | ||
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| Plate reader measurements of the Bacillus promoters PliaG, PliaI and PlepA finished. Look at Data!
| |
| 16-20 July 2012 |
|
| Plate reader measurements of the Anderson promoters J23100, J23101, J23102, J23103, J23106, J23107, J23113, J23114, J23115, J23117, J23118 in the Bacillus reporter vector pSBBs3C-luxABCDE completed. Look at Data! |
Cloning of the Anderson promoters J23100, J23102, J23103, J23106 in the reporter vector pSBBs1C-lacZ for β-galactosidase assays finished.
9-13 July 2012
2-6 July 2012
Jenny presented Bacillus germination review to the group. We discussed stages of germination & how our mutants would prevent germination from occurring. Discussed possible germination causes besides nutrients, and how to hopefully prevent them. We realized partial germination caused by biochemical reactions from nutrients might cause the spores to deform, even if they did not complete germination. Therefore Jenny began research on this possibility.
Clean deletions of germination genes sleB and cwlB from PCR accomplished. DNA purified and frozen to be later transformed with Bacillus.
β-galactosidase assays of the promoters PliaG, PliaI and Pveg are finished. Look at Data!
Cloning of the Anderson promoters J23100, J23101, J23102, J23103, J23106, J23107, J23113, J23114, J23115, J23117, J23118 in pSB1C3 finished.
25-29 June 2012
18-22 June 2012
11-15 June 2012
Clean deletions of germination genes cwlD, cwlJ, and gerD from PCR accomplished. DNA purified and frozen to be later transformed with Bacillus.
4-8 June 2012
28-1 June 2012
21-25 May 2012
Promoters PliaG, PliaI, Pveg and PlepA are now in the vector pSB1C3 as BioBrick standard for the registry. BioBricks are BBa_K823000, BBa_K823001, BBa_K823002, BBa_K823003.
The Anderson promoters J23100, J23101, J23102, J23103, J23106, J23107, J23113, J23114, J23115, J23117, J23118 are now in the Bacillus reporter vector pSBBs3C-luxABCDE for measuring their activity as luminescence.
The Bacillus promoters PliaG, PliaI and PlepA are in the Bacillus reporter vector pSBBs3C-luxABCDE.
14-18 May 2012
7-11 May 2012
Cloning of PliaG, PliaI and Pveg in vector pSBBs1C-lacZ finished.
30 April-4 Mai 2012
23-27 April 2012
16-20 April 2012
9-13 April 2012
Jara created the single mutant cwlD::kan.
2-6 April 2012
Jara successfully created our first single knockouts of germination genes using a resistance cassettes: sleB::mls, gerD::cat and cwlJ::spec.
Jara tried knocking out cwlB using the kan resistance cassette. Mutants of cwlB::kan grew very poorly though.
26-30 March 2012
Jara tried knocking out cwlB using the tet resistance cassette. Mutants of cwlB::tet grew very poorly.
19-23 March 2012
We decided which genes to knock out for the germination stop. Based on the work of [http://www.ncbi.nlm.nih.gov/pubmed/19554258 J. Kim and W. Schumann (2009)], we decided to knock out genes cwlB, gerD, cwlJ, and sleB. From the research of [http://www.ncbi.nlm.nih.gov/pubmed/11466293 B. Setlow et al (2001)], we also chose cwlD.
12-16 March 2012
5-9 March 2012
27 February - 2 March 2012
20-24 February 2012
Team fully formed!
Antibiotic abbreviation legend:
cat: chloramphenicol
kan: kanamycin
mls: Macrolide-Lincosamide-Streptogramin B
spec: spectinomycin
tet: tetracycline
