| Line 81: | Line 81: | ||
|- | |- | ||
!colspan="3"|Vgb promoter | !colspan="3"|Vgb promoter | ||
| + | |- | ||
| + | |ø -> FNR | ||
| + | |1 | ||
| + | |Constant production of FNR | ||
| + | |- | ||
| + | |FNR -> ø | ||
| + | |0.001 | ||
| + | |Constant degradation of FNR | ||
| + | |- | ||
| + | |ø -> ArcA | ||
| + | |1 | ||
| + | |Constant production of ArcA | ||
| + | |- | ||
| + | |ArcA -> ø | ||
| + | |0.001 | ||
| + | |Constant degradationof ArcA | ||
|- | |- | ||
|} | |} | ||
| Reaction | Propensity | Comments |
|---|---|---|
| Lldr promoter | ||
| ø -> Lldr | 0.1 | Constant production of Lldr |
| Lldr -> ø | 0.0001 | Constant degradation of Lldr relative to the creation of Lldr giving a molecule number of 1000. |
| 2 Lldr -> Lldr2 | 3 | Dimerization of Lldr |
| Lldr2 -> 2 Lldr | 100 | Undimerization of Lldr giving a majority of Lldr in dimer. |
| Lldr2 -> Lldr | 0.0001 | Degradation of Lldr dimer. |
| Lldr2 + Lact -> Lldr2Lact | 0.0001 | Binding of lactate to Lldr dimer. Lactate is notconsumed. |
| Lldr2Lact -> Lldr2 | 1 | Unbinding of Lactate to dimer |
| Lldr2Lact -> Lldr | 0.0001 | Degradation of Lldr in Lldr-Lactate complex |
| Lldr2 + pLact -> pLactLldr2 | 1 | Binding of dimer to lld promoter |
| pLactLldr2 -> Lldr2 + pLact | 0.1 | Unbinding of dimer to promoter |
| pLactLldr2 -> Lldr + pLact | 0.0001 | Degradation of Lldr bound to prooter. |
| pLactLldr2 + Lact -> pLactLldr2Lact + Lact | 0.0001 | Binding of lactate to promoter dimer complex. |
| pLactLldr2Lact -> pLactLldr2 | 1 | Release of lactate from promoter dimer complex. |
| pLactLldr2Lact -> pLactLldr2Lact + mLuxi | 0.005 | Transcription of activated promoter gives LuxI mRNA |
| mLuxI -> ø | 0.0025 | Degradation of LuxI mRNA |
| mLuxI -> mLuxI + LuxI | 0.0167 | Translation of LuxI mRNA |
| LuxI -> ø | 0.0002814 | Degradation of LuxI |
| Vgb promoter | ||
| ø -> FNR | 1 | Constant production of FNR |
| FNR -> ø | 0.001 | Constant degradation of FNR |
| ø -> ArcA | 1 | Constant production of ArcA |
| ArcA -> ø | 0.001 | Constant degradationof ArcA |
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