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Team:Cambridge/Project/MagnesiumRiboswitch
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Magnesium is essential for life, being a vital component of many enzymatic reactions. Of particular interest for synthetic biology is its role in the action of DNA polymerase enzymes such as Taq. and Phusion. However, no teams have really characterized a sensor that can be used to measure its concentration in solution. Such a biological sensor exists in the form of the ''bacillus'' Mg2+ riboswitch. As shown in the diagram, we attempted to isolate this component and submit it as a biobrick, characterizing its function by inserting it into a derepressor construct. | Magnesium is essential for life, being a vital component of many enzymatic reactions. Of particular interest for synthetic biology is its role in the action of DNA polymerase enzymes such as Taq. and Phusion. However, no teams have really characterized a sensor that can be used to measure its concentration in solution. Such a biological sensor exists in the form of the ''bacillus'' Mg2+ riboswitch. As shown in the diagram, we attempted to isolate this component and submit it as a biobrick, characterizing its function by inserting it into a derepressor construct. | ||
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[[File:Mg2+construct.png|right|750px|thumb|The construct made in the pJS130 vector for the detection of changes in Mg2+ ion concentrations]] | [[File:Mg2+construct.png|right|750px|thumb|The construct made in the pJS130 vector for the detection of changes in Mg2+ ion concentrations]] | ||
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Revision as of 11:53, 10 August 2012
Magnesium riboswitch
Magnesium is essential for life, being a vital component of many enzymatic reactions. Of particular interest for synthetic biology is its role in the action of DNA polymerase enzymes such as Taq. and Phusion. However, no teams have really characterized a sensor that can be used to measure its concentration in solution. Such a biological sensor exists in the form of the bacillus Mg2+ riboswitch. As shown in the diagram, we attempted to isolate this component and submit it as a biobrick, characterizing its function by inserting it into a derepressor construct.
The riboswitch acts as a transcriptional attenuator when Mg2+ is bound, causing disengagement of the RNA polymerase before it can access downstream ORFs. Consequently, these proteins are not expressed. The system that we used inserted this riboswitch just upstream of the LacI repressor in plasmid pJS130. The lac operator that LacI acted on was upstream of sfGFP, consequently expression of LacI blocked transcription of GFP.
To characterize this construct, we will use a 96-well plate reader to assay the effects of the different concentrations of Mg2+ and IPTG on the levels of GFP. We would expect the presence of either to allow the expression of GFP, however because transcriptional attenuation by the riboswitch occurs before expression of the repressor protein, it may be expected that Mg2+ will somehow demonstrate a dominant effect.
