Team:HokkaidoU Japan/Notebook/aggregation Week 6

From 2012.igem.org

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Ethanol precipitation for digestion and gel extraction product.
Ethanol precipitation for digestion and gel extraction product.
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#Added 5 ul of NaoAc, 1.5 ul of glycogen and 125ul of 100% ethanol.
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#Added 5 ul of NaoAc, 1.5 ul of glycogen and 125 ul of 100% ethanol.
#Centrifuged in 15000 rpm, 10 min at 4C.
#Centrifuged in 15000 rpm, 10 min at 4C.
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#Remove supernatant and added 220ul of 70% ethanol.
+
#Remove supernatant and added 220 ul of 70% ethanol.
#Centrifuged in 15000 rpm, 10 min at 4C.
#Centrifuged in 15000 rpm, 10 min at 4C.
#Remove supernatant and air drying in room temperature then added 10 ul of DW.  
#Remove supernatant and air drying in room temperature then added 10 ul of DW.  

Revision as of 07:55, 6 August 2012


Contents

August 6th

Ethanol precipitation

Ethanol precipitation for digestion and gel extraction product.

  1. Added 5 ul of NaoAc, 1.5 ul of glycogen and 125 ul of 100% ethanol.
  2. Centrifuged in 15000 rpm, 10 min at 4C.
  3. Remove supernatant and added 220 ul of 70% ethanol.
  4. Centrifuged in 15000 rpm, 10 min at 4C.
  5. Remove supernatant and air drying in room temperature then added 10 ul of DW.

Ligation

We ligated pT7-RBS on pSB1K3 (digested Spe1) as vector and Ag43-dT (digested Spe1 and Xba1 and HindIII) as insert.

pT7-RBS 1 ul
Ag43-dT 2 ul
DW 2 ul
Ligation Mighty Mix(TAKARA) 5 ul
Total 10 ul


Ligation reaction time was written below.

Degree Minute
16 30
65 10
4 Hold

mini-prep

mini-prep of pBad-RBS. We used FastGene Plasmid Mini Kit(Nippon Genetics) and got 50 ul of DNA solutions. [[image:|thumb|mini-prep result]]

transformation

Transformation of plasmid DNA (pT7-RBS-Ag43-dT on pSB1K3) in E. coli(DH5α).

  1. Added 2 ul of plasmid DNA to 50 ul of thawed competent cells on ice.
  2. Incubated on ice for 30 min.
  3. Added 600 ul of LB then incubated the cells for 2 hours at 37C.
  4. Prepared and Labeled two LBK plates.
  5. Plated 300 ul of the culture onto first dish and spread.
  6. Added 900 ul of LB to 100 ul of the culture and plated 300 ul of it onto second dish and spread.
  7. Incubated them at 37C for hours.