Team:Groningen/Modeling

From 2012.igem.org

(Difference between revisions)
Line 11: Line 11:
!align="center"|[[Team:Groningen/Attributions|Attributions]]
!align="center"|[[Team:Groningen/Attributions|Attributions]]
|}
|}
-
 
+
{|align="center"
-
 
+
<br>
-
'''Modeling Targets'''
+
|[[File:Groningen2012 JP 20120509 bsc Reaction Map v0.png|center|680px]]
 +
<br>
 +
|-
 +
|'''Modeling Targets'''
<br>
<br>
'''''Germination'''''
'''''Germination'''''
Line 30: Line 33:
# Opacity as a function of lycopene concentration
# Opacity as a function of lycopene concentration
'''''OMIX visualization through reaction pathways'''''
'''''OMIX visualization through reaction pathways'''''
 +
|}

Revision as of 19:26, 10 May 2012

Home Team Official Team Profile Public Relations Project Parts Submitted to the Registry Modeling Notebook Safety Attributions

Groningen2012 JP 20120509 bsc Reaction Map v0.png


Modeling Targets


Germination

  1. Effects of h2o and L-alanine concentrations on germination rate.

Volatile production

  1. Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)

Normal operation

  1. Receptor sensitivities
    • Binding rate as a function of volatile concentration (TAAR5)
  2. Diffusion rates
    • Through the membrane (nh4_diffusion, h_diffusion)
    • Through ion channels (nh4_ion)
  3. Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
  4. Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
  5. Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
  6. Opacity as a function of lycopene concentration

OMIX visualization through reaction pathways

Retrieved from "http://2012.igem.org/Team:Groningen/Modeling"