Team/CINVESTAV-IPN-UNAM MX/Lightandoxre.htm
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<img src="https://static.igem.org/mediawiki/2012/4/40/Oxy01.jpg" alt="oxy01" width="561" height="241"> | <img src="https://static.igem.org/mediawiki/2012/4/40/Oxy01.jpg" alt="oxy01" width="561" height="241"> | ||
<p>Figure 1. This BioBrick will show if our dependent promoter is functional, using the | <p>Figure 1. This BioBrick will show if our dependent promoter is functional, using the | ||
- | constitutive (or natural) system from R. sphaeroides or the orthologue system from R.palustris.</p> | + | constitutive (or natural) system from <em>R. sphaeroides</em> or the orthologue system from <em>R.palustris.</em></p> |
<img src="https://static.igem.org/mediawiki/2012/1/1c/Oxy02.jpg" width="563" height="183"> | <img src="https://static.igem.org/mediawiki/2012/1/1c/Oxy02.jpg" width="563" height="183"> | ||
<p>Figure 2. This BioBrick will show if our complete system is functional because probably | <p>Figure 2. This BioBrick will show if our complete system is functional because probably | ||
we need a synthetic system to promote GFP expression by binding its target sequence | we need a synthetic system to promote GFP expression by binding its target sequence | ||
- | (dependent promoter) in R. palustris.</p> | + | (dependent promoter) in <em>R. palustris.</em></p> |
- | <p>Both systems were cloned in pRK415 because | + | <p>Both systems were cloned in pRK415 because this is a vector for Purple Non-Sulfur |
- | Photosynthetic Bacteria, the plasmids were introduced in R. sphaeroides and R. palustris, | + | Photosynthetic Bacteria, the plasmids were introduced in <em>R. sphaeroides</em> and <em>R.palustris</em>, |
by biparental and triparental conjugation.</p> | by biparental and triparental conjugation.</p> | ||
<p>The measurement approach was: | <p>The measurement approach was: | ||
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</p><br> | </p><br> | ||
- | <p>For all data results, we considered a negative control: | + | <p>For all data results, we considered a negative control: <em>R. sphaeroides</em> and |
- | + | <em>R.palustris</em>, conjugated bacteria with pRK415 vector without BioBrick.</p> | |
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</div> | </div> | ||
- | <p>Figure 4. Images obtained by fluorescence microscopy | + | <p>Figure 4. Images obtained by fluorescence microscopy, where our systems |
were functional in the expected conditions.</p> | were functional in the expected conditions.</p> | ||
<p id="text2">Discussion</p> | <p id="text2">Discussion</p> | ||
- | <p>In R. sphaeroides, the best functionality of our system was in aerobic and darknesss | + | <p>In <em>R. sphaeroides</em>, the best functionality of our system was in aerobic and darknesss |
condition, it was not the expected result, but probably the activation is due to the | condition, it was not the expected result, but probably the activation is due to the | ||
incomplete repression of the system because we were overexpressing the constitutive | incomplete repression of the system because we were overexpressing the constitutive | ||
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<br> | <br> | ||
- | In R. palustris, we had a good response in the expected condition, our Light and Oxygen | + | In <em>R.palustris</em>, we had a good response in the expected condition, our Light and Oxygen |
Control System is functional in anaerobic and light condition because we had a lower GFP level in BioBrick BBa_K77608 because orthologous proteins probably have a low affinity by this sequence, but when we introduced the complete system BBa_K776020, the | Control System is functional in anaerobic and light condition because we had a lower GFP level in BioBrick BBa_K77608 because orthologous proteins probably have a low affinity by this sequence, but when we introduced the complete system BBa_K776020, the | ||
synthetic system promoted the GFP expression.</p> | synthetic system promoted the GFP expression.</p> | ||
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<p id="text2">Conclusion</p> | <p id="text2">Conclusion</p> | ||
<p>Our two BioBricks (K776018 and BBa_K776020) are functional in two photosynthetic | <p>Our two BioBricks (K776018 and BBa_K776020) are functional in two photosynthetic | ||
- | bacteria R. palustris and R. sphaeroides. This is a functional system for controlling genetic | + | bacteria <em>R.palustris</em> and <em>R. sphaeroides.</em> This is a functional system for controlling genetic |
expression with Light and Oxygen signals.</p> | expression with Light and Oxygen signals.</p> | ||
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<!-- end #page --> | <!-- end #page --> | ||
<div id="piep"> | <div id="piep"> | ||
- | <p align="center"> Rhodofactory 2012 </p> | + | <p align="center"> <strong>Rhodofactory 2012</strong> </p> |
<div id="sponsors"> | <div id="sponsors"> | ||
<div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="90" height="82" /></div> | <div align="center"><img src="https://static.igem.org/mediawiki/2012/8/8a/Icytdf.png" alt="icytdf" width="90" height="82" /></div> |
Revision as of 00:51, 26 October 2012
Light and oxygen response!
AppA/PpsR Regulation System
In this repressor/antirepressor system, under low oxygen tension, the GFP
expression is possible because the repressor PpsR is forming a complex with the
antirepresssor protein AppA. Moreover, when blue light fall upon the complex, a
conformational change in AppA breaks the complex, and AppA avoid GFP expression. (See
Rhodofactory section for a complete explanation).
We made two BioBricks (BBa_K776018 y BBa_K776020) to test the Light &
Oxygen Control System, each one has GFP as a reporter gene and the functionality was
related to the fluorescence detection.
Figure 1. This BioBrick will show if our dependent promoter is functional, using the constitutive (or natural) system from R. sphaeroides or the orthologue system from R.palustris.
Figure 2. This BioBrick will show if our complete system is functional because probably we need a synthetic system to promote GFP expression by binding its target sequence (dependent promoter) in R. palustris.
Both systems were cloned in pRK415 because this is a vector for Purple Non-Sulfur Photosynthetic Bacteria, the plasmids were introduced in R. sphaeroides and R.palustris, by biparental and triparental conjugation.
The measurement approach was:
We used 3 environmental growing conditions:
For all data results, we considered a negative control: R. sphaeroides and R.palustris, conjugated bacteria with pRK415 vector without BioBrick.
Figure 4. Images obtained by fluorescence microscopy, where our systems were functional in the expected conditions.
Discussion
In R. sphaeroides, the best functionality of our system was in aerobic and darknesss
condition, it was not the expected result, but probably the activation is due to the
incomplete repression of the system because we were overexpressing the constitutive
proteins. Altought, we obtained GFP expression with a lower level, in the expected
condition, both BioBricks (BBa_K776018 y BBa_K776020) were functional.
In R.palustris, we had a good response in the expected condition, our Light and Oxygen
Control System is functional in anaerobic and light condition because we had a lower GFP level in BioBrick BBa_K77608 because orthologous proteins probably have a low affinity by this sequence, but when we introduced the complete system BBa_K776020, the
synthetic system promoted the GFP expression.
Conclusion
Our two BioBricks (K776018 and BBa_K776020) are functional in two photosynthetic bacteria R.palustris and R. sphaeroides. This is a functional system for controlling genetic expression with Light and Oxygen signals.
Rhodofactory 2012