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Team:Exeter/Results/GlycoBase
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| + | <p>By searching different databases online we were able to catalogue over 120 glycosyltransferases from different strains of <i>E. coli</i>. We set up the database so that the enzymes could be categorised by their acceptor and donor sugars. From that we were able to determine which sugars we would be able to stick together with the particular glycosyltransferases that we found. We called this database GlycoBase and this was the foundation of our project.</p> | ||
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Revision as of 22:06, 26 September 2012
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By searching different databases online we were able to catalogue over 120 glycosyltransferases from different strains of E. coli. We set up the database so that the enzymes could be categorised by their acceptor and donor sugars. From that we were able to determine which sugars we would be able to stick together with the particular glycosyltransferases that we found. We called this database GlycoBase and this was the foundation of our project.
| D-GalNAc | Und-P | Und-P-P-GlcNAc | Escherichia coli | N |
NO |
| D-GalNAc | Und-P | Und-P-P-GlcNAc | Escherichia coli | N |
NO |
| D-GalNAc | Und-P | Und-P-P-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-GalNAc | Alpha-D-Gal(1->3)-Beta-D-GalNAc | Escherichia coli | N |
YES |
| Alpha-D-Gal | Alpha-L-Fuc | Alpha-D-Gal-(1->3)-(Alpha-L-Fuc-(1->2))-Beta-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Gal | Alpha-L-FucNAm | Alpha-D-Gal-(1->3)-Alpha-L-FucNAm | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-GalNAc | Beta-D-Gal(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-Gal | Beta-D-Gal-(1->4)-Beta-D-Gal | Escherichia coli | Y |
NO |
| Beta-D-Gal | Beta-D-Glc | Beta-D-Gal-(1->4)-Beta-D-Glc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-Galf | Beta-D-Gal-(1->6)-Beta-D-Galf | Escherichia coli | N |
NO |
| Alpha-D-GalA | Alpha-L-Fuc | Alpha-D-GalA-(1->3)-Alpha-L-Fuc | Shigella dysenteriae | N |
NO |
| Beta-D-GalA | Alpha-D-GlcNAc | Beta-D-GalA-(1->3)-Alpha-D-GlcNAc | Shigella boydii | N |
NO |
| Alpha-D-GalNAc | Alpha-D-GalNAc | Alpha-D-GalNAc-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-GalNAc | Alpha-D-Gal | Beta-D-GalNAc(1->4)-Alpha-D-Gal | Escherichia coli | N |
YES |
| Alpha-L-Fuc | Beta-D-Gal | Alpha-L-Fuc-(1->2)-Beta-D-Gal | Escherichia coli | Y |
YES |
| Alpha-L-FucNAc | Alpha-D-Glc | Alpha-L-FucNAc-(1->4)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-L-FucNAc | Alpha-D-GlcNAc | Alpha-L-FucNAc-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-FucNAm | Beta-D-GlcNAc | Alpha-L-FucNAm-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-L-Rha | Alpha-L-Rha-(1->3)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-L-Rha | Alpha-L-Rha-(1->2)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-D-Glc | Alpha-L-Rha-(1->6)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-D-Man | Alpha-L-Rha-(1->3)-Alpha-D-Man | Escherichia coli | Y |
NO |
| Alpha-L-Rha | Beta-L-Rha | Alpha-L-Rha-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-L-Rha | Alpha-L-Rha-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-D-GlcNAc | Alpha-L-Rha-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-L-FucNAc | Alpha-L-Rha-(1->4)-Alpha-L-FucNAc | Escherichia coli | N |
NO |
| Beta-L-Rha | Beta-D-GlcNAc | Beta-L-Rha-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-L-Rha | Beta-L-Rha | Beta-L-Rha-(1->4)-Beta-L-Rha | Escherichia coli | N |
NO |
| Beta-L-Rha | Beta-D-GlcNAc | Beta-L-Rha-(1->4)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-L-Rha | Alpha-D-GlcNAc | Beta-L-Rha-(1->4)-Alpha-D-GlcNAc | Escherichia coli | Y |
NO |
| Alpha-D-Man | Beta-D-GlcNAc | Alpha-D-Man-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Man | Alpha-D-Man | Alpha-D-Man-(1->3)-Alpha-D-Man | Escherichia coli | N |
NO |
| Alpha-D-Man | Beta-D-Gal | Alpha-D-Man-(1->4)-Beta-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Man | Alpha-D-Man | Alpha-D-Man-(1->2)-Alpha-D-Man | Escherichia coli | N |
NO |
| Beta-D-Man | Alpha-D-GlcNAc | Beta-D-Man-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-Man | Beta-D-Gal | Beta-D-Man-(1->3)-Beta-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Galf | Beta-D-GalA | Alpha-D-Galf-(1->4)-Beta-D-GalA | Shigella boydii | Y |
NO |
| Beta-D-Galf | Alpha-D-Glc | Beta-D-Galf-(1->6)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Beta-D-Galf | Beta-D-Galf | Beta-D-Galf-(1->5)-Beta-D-Galf | Shigella boydii | N |
NO |
| Beta-D-Galf | Beta-D-GlcNAc | Beta-D-Galf-(1->3)-Beta-D-GlcNAc | Shigella boydii | N |
NO |
| Beta-D-Galf | Beta-D-GlcNAc | Beta-D-Galf-(1->3)-Beta-D-GlcNAc | Shigella boydii | N |
NO |
| Beta-D-Galf | Beta-D-GalNAc | Beta-D-Galf-(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Glc | Alpha-D-Glc-(1->4)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-L-Rha | Alpha-D-Glc-(1->3)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-L-FucNAc | Alpha-D-Glc-(1->3)-Alpha-L-FucNAc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Beta-D-Glc | Alpha-D-Glc-(1->2)-Beta-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Glu | Alpha-D-Glc-(1->4)-Alpha-D-Glc-(1->4)-1,4-Alpha-D-Glu | Escherichia coli | N |
NO |
| Beta-D-Glc | Beta-D-GalNAc | Beta-D-Glc-(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Glc | Alpha-D-GalNAc | Beta-D-Glc-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Glc | Beta-D-GlcNAc | Beta-D-Glc-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-GlcA | Alpha-D-GlcNAc | Beta-D-GlcA-(1->4)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-GlcA | Alpha-D-Man | Beta-D-GlcA-(1->2)-Alpha-D-Man | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Und-P | Alpha-D-GlcNAc-P-P-Und | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Beta-D-Galf | Alpha-D-GlcNAc-(1->2)-Beta-D-Galf | Shigella boydii | N |
NO |
| Alpha-D-GlcNAc | Alpha-D-GalA | Beta-D-GlcNAc-(1->4)-Alpha-D-GalA | Shigella dysenteriae | N |
NO |
| Alpha-D-GlcNAc | Alpha-D-GlcA | Alpha-D-GlcNAc-(1->4)-Alpha-DGlcA | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Alpha-D-Glc | Alpha-D-GlcNAc-(1->6)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Beta-D-GlcNAc | Alpha-D-GlcNAc-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-GlcNAc | Alpha-L-Rha | Beta-D-GlcNAc-(1->2)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Beta-D-GlcNAc | Beta-D-Glc | Beta-D-GlcNAc-(1->2)-Beta-D-Glc | Escherichia coli | Y |
NO |
| Alpha-Neu5Ac | Beta-D-GlcNAc | Alpha-Neu5Ac-(2->6)-Beta-D-Gal-(1->4)-Beta-D-GlcNAc | Drosophila spp. | N |
NO |
| Beta-D-Glc | Beta-D-GlcNAc | Beta-D-Glc-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-Glc | Alpha-D-Gal-(1->2)-Beta-D-Glc | Escherichia coli | Y |
NO |
| Alpha-Neu5Ac | Beta-D-Glc | Alpha-Neu5Ac-(2->3)-Beta-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-GlcNAc | Alpha-D-Gal-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-GlcNAc | Beta-D-Gal-(1->3)-Beta-D-GlcNAc | Escherichia coli | Y |
NO |
| Beta-D-GlcNAc | Alpha-D-Gal | Beta-D-GlcNAc-(1->3)-Alpha-D-Gal | Escherichia coli | N |
NO |
| Alpha-L-6dTal | Alpha-D-FucNAc | Alpha-L-6dTal-(1->3)-Alpha-D-FucNAc | Escherichia coli | N |
NO |
| Beta-D-Glc | Alpha-L-6dTal | Beta-D-Glc-(1->3)-Alpha-L-6dTal | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-GlcNAc | Alpha-D-Gal-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-Man | Beta-D-Gal-(1->4)-Beta-D-Man | Escherichia coli | N |
NO |
| Beta-D-Man | Alpha-D-Gal | Beta-D-Man-(1->4)-Alpha-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Gal | Alpha-D-Glc-(1->6)-Alpha-D-Gal | Shigella dysenteriae | N |
NO |
| Alpha-D-Gal | Alpha-L-FucNAc | Alpha-D-Gal-(1->3)-Alpha-L-FucNAc | Shigella dysenteriae | Y |
NO |
| Beta-D-Glc | Alpha-L-FucNAc | Beta-D-Glc-(1->4)-Alpha-L-FucNAc | Shigella dysenteriae | N |
NO |
| Beta-D-GlcNAc | Beta-D-Galf | Beta-D-GlcNAc-(1->3)-Beta-D-Galf | Escherichia coli | N |
NO |
| Beta-D-Galf | Alpha-D-GlcNAc | Beta-D-Galf-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Man | Alpha-D-Man | Alpha-D-Man-(1->4)-Alpha-D-Man | Escherichia coli | N |
NO |
| Alpha-D-Man | Beta-D-GlcNAc | Alpha-D-Man-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Beta-D-Man | Alpha-D-GlcNAc-(1->2)-Beta-D-Man | Escherichia coli | N |
NO |
| Beta-D-Glc | Alpha-L-6dTal | Beta-D-Glc-(1->3)-Alpha-L-6dTal | Escherichia coli | N |
NO |
| Alpha-D-Man | Beta-D-Man | Alpha-D-Man-(1->2)-Beta-D-Man | Escherichia coli | N |
NO |
| Alpha-D-Man | Alpha-D-Man | Alpha-D-Man-(1->2)-Alpha-D-Man | Escherichia coli | N |
NO |
| Beta-D-Man | Alpha-D-GlcNAc | Beta-D-Man-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-Gal | Alpha-D-Gal-(1->3)-Beta-D-Gal | Escherichia coli | Y |
NO |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-GalNAc | Beta-D-Gal-(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Alpha-D-GalNAc | Beta-D-GalNAc | Alpha-D-GalNAc-(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-GlcNAc | Beta-D-Gal-(1->4)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-L-QuiNAc | Alpha-D-GalNAcA | Alpha-L-QuiNAc-(1->4)-Alpha-D-GalNAcA | Escherichia coli | N |
NO |
| Alpha-D-GalNAcA | Alpha-L-QuiNAc | Alpha-D-GalNAcA-(1->3)-Alpha-L-QuiNAc | Escherichia coli | N |
NO |
| Alpha-L-QuiNAc | Beta-D-GlcNAc | Alpha-L-QuiNAc-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-Rha | Alpha-D-Rha | Alpha-D-Rha-(1->2)-Alpha-D-Rha | Escherichia coli | N |
NO |
| Alpha-D-Rha | Alpha-D-Rha | Alpha-D-Rha-(1->3)-Alpha-D-Rha | Escherichia coli | N |
NO |
| Alpha-Neu5Ac | Beta-D-Gal | Alpha-D-Neu5Ac-(2->3)-Beta-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Gal | Alpha-Neu5Ac | Alpha-D-Gal-(1->4)-Alpha-Neu5Ac | Escherichia coli | N |
NO |
| Beta-D-Gal | Beta-D-GalNAc | Beta-D-Gal-(1->3)-Beta-D-GalNAc | Escherichia coli | N |
NO |
| Beta-D-Ribf | Alpha-L-Rha | Beta-D-Ribf-(1->2)-Alpha-L-Rha | Escherichia coli | Y |
NO |
| Beta-D-GalNAc | Alpha-L-Rha | Beta-D-GalNAc-(1->3)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-D-GlcNAc | Alpha-L-Rha-(1->4)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-D-GlcNAc | Beta-D-Gal | Alpha-D-GlcNAc-(1->4)-Beta-D-Gal | Escherichia coli | N |
NO |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-GlcNAc | Alpha-D-Gal-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Alpha-Col | Alpha-D-Glc | Alpha-Col-(1->3)-Alpha-D-Glc OR Alpha-Col-(1->6)-Alpha-D-Glc | Escherichia coli | Y |
NO |
| Beta-D-GlcNAc | Alpha-D-GalNAc | Beta-D-GlcNAc-(1->3)-Alpha-D-GalNAc | Escherichia coli | Y |
NO |
| Alpha-D-GalNAc | Alpha-D-Glc | Alpha-D-GalNAc-(1->4)-Alpha-D-Glc | Shigella boydii | N |
NO |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | Y |
NO |
| Alpha-D-GalA | Alpha-D-Gal | Alpha-D-GalA-(1->3)-Alpha-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-GalNAc | Alpha-D-GalA | Alpha-D-GalNAc-(1->4)-Alpha-D-GalA | Escherichia coli | N |
NO |
| Alpha-D-Gal | Beta-D-GlcNAc | Alpha-D-Gal-(1->3)-Beta-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-Ribf | Beta-D-Gal | Beta-D-Ribf-(1->4)-Beta-D-Gal | Escherichia coli | N |
NO |
| Beta-D-Gal | Alpha-D-GlcNAc | Beta-D-Gal-(1->3)-Alpha-D-GlcNAc | Escherichia coli | N |
NO |
| Beta-D-GalNAc | Alpha-L-Rha | Beta-D-GalNAc-(1->3)-Alpha-L-Rha | Escherichia coli | N |
NO |
| Alpha-L-Rha | Alpha-D-Glc | Alpha-L-Rha-(1->4)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Beta-D-Gal | Alpha-D-Glc-(1->4)-Beta-D-Gal | Escherichia coli | N |
NO |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Gal | Alpha-D-Glc-(1->2)-Alpha-D-Gal | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Glc | Alpha-D-Glc-(1->2)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Alpha-D-Glc | Alpha-D-Gal-(1->2)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Glc | Alpha-D-Glc | Alpha-D-Glc-(1->3)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-Gal | Alpha-D-Gal | Alpha-D-Gal-(1->2)-Alpha-D-Gal | Escherichia coli | Y |
NO |
| Beta-D-Glc | Alpha-D-Glc | Beta-D-Glc-(1->3)-Alpha-D-Glc | Escherichia coli | Y |
NO |
| Alpha-D-Gal | Alpha-D-Glc | Alpha-D-Gal-(1->6)-Alpha-D-Glc | Escherichia coli | Y |
NO |
| Alpha-D-GlcNAc | Alpha-D-Glc | Alpha-D-GlcNAc-(1->2)-Alpha-D-Glc | Escherichia coli | Y |
NO |
| Alpha-D-Glc | Alpha-D-Glc | Alpha-D-Glc-(1->2)-Alpha-D-Glc | Escherichia coli | Y |
NO |
| Alpha-D-Gal | Alpha-D-Glc | Alpha-D-Gal-(1->3)-Alpha-D-Glc | Escherichia coli | N |
NO |
| Alpha-D-GalNAc | Alpha-D-GalNAc | Alpha-D-GalNAc-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
YES |
| Beta-D-Gal | Alpha-D-GalNAc | Beta-D-Gal-(1->3)-Alpha-D-GalNAc | Escherichia coli | N |
YES |
| Alpha-L-Fuc | Beta-D-Gal | Alpha-L-Fuc-(1->2)-Beta-D-Gal | Escherichia coli | Y |
YES |
| Alpha-D-Gal | Beta-D-Gal | Alpha-D-Gal-(1->3)-Beta-D-Gal | Escherichia coli | N |
YES |
| Beta-D-GalNAc | Alpha-D-Gal | Beta-D-GalNAc-(1->4)-Alpha-D-Gal | Escherichia coli | N |
YES |
