Team:Uppsala University/Modelling
From 2012.igem.org
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<div id="headlines"> | <div id="headlines"> | ||
- | <a href="#sRNAmod">Modelling sRNA</a> | <a href="#candsrnas">sRNAs validated to downregulate</a> | <a href="#srnayfp">sRNAs matching | + | <a href="#sRNAmod">Modelling sRNA</a> | <a href="#candsrnas">sRNAs validated to downregulate AAC(6')</a> | <a href="#srnayfp">sRNAs matching SYFP2</a> |
</div> | </div> | ||
</div> | </div> | ||
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Number of hybridizing base pairs = 8 bp<br> | Number of hybridizing base pairs = 8 bp<br> | ||
Maximum number of hybridizing bases in a row = 8 bp<br> | Maximum number of hybridizing bases in a row = 8 bp<br> | ||
- | Result on Etest > | + | Result on Etest > 256µg/ml <br> |
- | Gibbs free energy = -11. | + | Gibbs free energy = -11.2kcal/mol<br> |
</td> | </td> | ||
</tr> | </tr> | ||
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</tr> | </tr> | ||
</table> | </table> | ||
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- | |||
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</table> | </table> | ||
<tr> | <tr> | ||
<td colspan="2"> | <td colspan="2"> | ||
- | <a | + | <table> |
+ | <tr><td class="subtext"><h2>sRNAs matching SYFP2</h2></td> | ||
+ | <td valign="bottom"><a id="top" href="#top">Back to top</a></td></tr> | ||
+ | </table> | ||
</td> | </td> | ||
</tr> | </tr> | ||
+ | <table id="ptable"> | ||
+ | <b>sRNA UU52:2</b> | ||
+ | |||
+ | <tr> | ||
+ | <td id="ptd1"> | ||
+ | <a href="https://static.igem.org/mediawiki/2012/5/59/SRNA52structure_28.3_medium.png"><img src="https://static.igem.org/mediawiki/2012/5/59/SRNA52structure_28.3_medium.png" id="rnapic"></a> | ||
+ | </td> | ||
+ | <td id="ptd1"> | ||
+ | <a href="https://static.igem.org/mediawiki/2012/6/63/SRNA52-mRNA_medium.png"><img src="https://static.igem.org/mediawiki/2012/6/63/SRNA52-mRNA_medium.png" id="intpic"></a> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td id="ptd1"> | ||
+ | dG = -28.3kcal/mol<br> | ||
+ | </td> | ||
+ | <td id="ptd2"> | ||
+ | Length in base pairs =82 <br> | ||
+ | Number of hybridizing base pairs =10 <br> | ||
+ | Maximum number of hybridizing bases in a row = 6 <br> | ||
+ | Gibbs free energy = -5.6 kcal/mol<br> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | <b>sRNA UU53</b> | ||
+ | <table id="ptable"> | ||
+ | <tr> | ||
+ | <td id="ptd1"> | ||
+ | <a href="https://static.igem.org/mediawiki/2012/1/15/SRNA53structure_medium.png"><img src="https://static.igem.org/mediawiki/2012/1/15/SRNA53structure_medium.png" id="rnapic"></a> | ||
+ | </td> | ||
+ | <td id="ptd1"> | ||
+ | <a href="https://static.igem.org/mediawiki/2012/6/64/SRNA53-mRNA_medium.png"><img src="https://static.igem.org/mediawiki/2012/6/64/SRNA53-mRNA_medium.png" id="intpic"></a> | ||
+ | </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td id="ptd1"> | ||
+ | dG = -34.5 kcal/mol<br> | ||
+ | </td> | ||
+ | <td id="ptd2"> | ||
+ | Length in base pairs =85 <br> | ||
+ | Number of hybridizing base pairs =21 <br> | ||
+ | Maximum number of hybridizing bases in a row =9 <br> | ||
+ | Gibbs free energy = -10.9kcal/mol<br> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
+ | </table></table> | ||
+ | |||
</div> | </div> |
Revision as of 12:18, 26 September 2012
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sRNA UU46 sRNA UU55
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dG = -28.3kcal/mol |
Length in base pairs =82 Number of hybridizing base pairs =10 Maximum number of hybridizing bases in a row = 6 Gibbs free energy = -5.6 kcal/mol |
dG = -34.5 kcal/mol |
Length in base pairs =85 Number of hybridizing base pairs =21 Maximum number of hybridizing bases in a row =9 Gibbs free energy = -10.9kcal/mol |