From 2012.igem.org

Latest revision as of 12:47, 24 September 2012

1.2 Chronicle of the philosophical evenings

After a short introduction in the definition, aims and different approaches of the synthetic biology ([1],[2],[3],[4]), we clarified some special philosophical terms in order to have a common basis for further discussion. During the first meeting we soon realised, that the synthetic biology grounds on a different epistemology as that from ‘pure sciences’.

Publications we worked with:

[1] Arkin A et al (2009): Synthetic biology: what’s in a name? Nat Biotechn 27 (12): 1071–1073
[2] Benner SA, Sismour AM (2005): Synthetic biology. Nat Rev Gen 6: 533-543
[3] Boldt J, Müller O, Maio G (2009): Synthetische Biologie. Eine ethisch-philosophische Analyse. EKAH, Bern
[4] O'Malley M, Powell A, Davies JF, Calvert J (2008): Knowledge-making distinctions in synthetic biology. Bioessays 30: 57-65

On our second meeting we tried to work out what the special epistemological characteristics of an applied science are [5]. We expounded the general epistemological problems and possibilities of an engineering discipline. We noticed that causal knowledge and natural laws are not the main aim of an engineering discipline, but efficient maxims and sufficient rules. In order to judge a technological system we only refer to their efficiency. We just see if something works or not. In the epistemology of technological sciences the concept of efficiency plays a similar role to that of which the concept of truth plays in the epistemology pure sciences, since scientific theories are judged by their truth value. Therefore, if the synthetic biology aspires to define itself as an engineering discipline, than is the aim of knowledge-making necessarily non-substantial [6].

Publications we worked with:

[5] Bunge M (1974): Technology as applied science. In: Rapp F (ed.) Contributions to a Philosophy of Technology: Readings in the Philosophical Problems of Technology. Free Press, New York. 19-39
[6] Schummer J (2011): Das Gotteshandwerk. Die künstliche Herstellung von Leben im Labor. Suhrkamp, Berlin

After asserting that the synthetic biology follows an ‘intentional epistemology’, we analysed the conceptual procedure of the synthetic biology. In view of the fact that the synthetic biology aims to create life, a consistent definition of the phenomena of life is needed, in order to have a reasonable goal ([7],[8]). Interestingly, the conception of life in the synthetic biology matches with the settled purposes [9]. The understanding of life is adjusted to the notion of things that humans can make, modify and comprehend. Thus, the synthetic biology approaches biological systems as technological systems ([10],[11]). In this context, the analogical transfer from technological properties into the realm of the living can be understood as the epistemological program from synthetic biology. Then this transfer promotes the aim of creating life, as it provides an understanding of life which makes it possible. In short: within the synthetic biology, we encounter living beings as if they were machines.

Publications we worked with:

[7] Brenner A (2007): Leben. Eine philosophische Untersuchung. EKAH, Bern
[8] Brenner A (2011): Living life and making life. Analecta Husserliana 110: 91-102
[9] Deplazes-Zemp A (2011): The Conception of Life in Synthetic Biology. Sci Eng Ethics doi:10.1007/s11948-011-9269-z
[10] Deplazes A, Huppenbauer M (2009): Synthetic organisms and living machines: Positioning the products of synthetic biology at the borderline between living and non-living matter. Syst Synth Bio 3(1-4): 55-63
[11] Schyfter P (2012): Technological biology? Things and kinds in synthetic biology. Biol Philos 27: 29-48

Because the synthetic biology approaches biological systems as technological systems by means of analogy, we examined the general concept of metaphors ([12],[13],[14]) and the epistemic value of inference out of analogies. Through this examination two problems became clear: First, because conceptual metaphors constitute of way to see, think and act towards things [14], it is necessary to inquiry how our position towards life might change in the light of it as a machine [3]. Second, if the synthetic biology do base upon conceptual metaphors, which are not identified as such, then serious epistemological problems exist. All inference out of the inductive argument of analogy is to be considered invalid. If we try to understand living beings as machines, it does not means, that living beings indeed behave as them.

Publications we worked with:

[12] Black M (1954): Metaphor. Proc Aristo Soc 55: 273-294
[13] Black M (1979): More about Metaphor. In: Ortony A (ed.): Metaphor and thought. Cambridge University Press, Cambridge. 19-43
[14] Lakoff G (1993): The contemporary theory of metaphor. In: Ortony A (ed.): Metaphor and thought. Cambridge University Press, Cambridge. 202-251

In our firth meeting, we discussed about the necessary properties that a living beings needs to have in order to be considered a ‘living machine’ ([10],[11],[15],[16]). For the following meetings we decided to analyse in detail the properties of artificiality and technical functionality, as machines are usually understood as physical objects, which were intentionally produced by human beings to achieve certain goals. Only if we can justify why products of synthetic biology are artificial and why do they have a technical function, we can use the expression ‘living machine’ as a proper term.

Publications we worked with:

[15] Brenner A (2011): Living life and making life. Analecta Husserliana 110: 91-102
[16] Schark M (2012): Synthetic Biology and the Distinction between Organisms and Machines. Environ. Values 21: 19-41

Our inquiry of artificiality showed that we ought not to use the adjective ‘artificial’ as an honorary title. Due to the existing continuum between the natural and the artificial (e.g. [17]), we cannot argue that something is simply natural or simply artificial. A bioengineering product is less artificial than Venter’s Synthia, which is respectively less artificial than a product of the protocell approach. All the products of synthetic biology are not simply ‘artificial life’: a bioengineering product has ‘artificial parts’, a synthetic genomics product an ‘artificial genome’ and, according to our argumentation, only the bottom-up protocell approach might be capable of producing entities, which could be meaningfully called as a whole ‘artificial life’ or ‘synthetic life’. Thus, all references to biological systems with the adjectives ‘artificial’ or ‘synthetic’ not being marked as a metaphor or as a future aim are therefore not warranted.

Publications we worked with:

[17] Sandler R (2012): Is artefactualness a value-relevant property of living beings? Synthese 185: 89-102

The further necessary property we examined was the technical functionality, because machines are not only made by humans, they are also supposed to have a useful function: a machine needs to be constructed with the intention to be a helpful mean for some human end. Although many of the scholars who worked on the products of the synthetic biology accepted almost unproblematic that the synthetic entities have technical functions (e.g. [10],[11],[18]), we wanted to examine in detail the idea of a synthetic biological product following a human-settled goal. For this, we decided to study the relation between technical functions and biological functions, as the concept of a ‘living machine’ seems to have both of them. Generally, referring to a function supposes to explain why its correspondent function bearer occurs and why it is there [19]. For example: if someone asks what a knife is, then we usually appeal to its function as cutting and stabbing tool and if someone asks what a heart is, then we answer referring to its function of pumping blood. Hence, functions are good for causal explanations. However, regarding the products of the synthetic biology we have an overdetermination problem, because we can explain what a trait is referring to both, technical functions and biological functions. Imagine following situation:

A synthetic biologist produces modified bacteria which are susceptible to glucose and that assist the treatment of diabetes in human beings. These bioengineered bacteria have a synthetic toggle switch which is activated when the blood sugar level reaches a tolerance threshold and allows the transcription of a substance to help the uptake of glucose from the blood. The decrease of glucose in blood allows the bacteria to live on.

If we want to explain why the bacteria have a toggle switch, we can say two things: this toggle switch enables the production of a substance, which decreases the amount of blood sugar and hence helps the treatment of diabetes or this toggle switch enables the production of a substance which decreases the amount of blood sugar and is therefore beneficial for the bacteria (and the occurrence of this toggle switch in the bacteria is the result of a feedback mechanisms involving the exercise of producing the substance). The bacteria has also a synthetic toggle switch, because it was constructed so or because it helps the whole system to live. If both functional explanations are correct in the same context, then we have a faulty overdetermination (two causes for one effect).

Publications we worked with:

[18] Holm S (2011a): Biocentrism and Synthetic Biology. App Ethics 62-74
[19] Krohs U, Kroes P (eds) (2009): Functions in biological artificial worlds. MIT press, Cambridge

We decided to work with to two different theories of functions in order to encounter the abovementioned overdetermination problem. On the one hand we studied the ICE-theory for the ascription of technical functions by agents ([20],[21]). On the other hand we studied the organisation account of biological functions ([22],[23],[24]). By the products of synthetic biology both ascriptions of functions are possible – although we noticed that the technical function ascription applies imperfectly. Through the analysis of specific situations and counterexamples we showed that the technical function ascription is neither necessary nor sufficient to explain the products of synthetic biology per se. The explanation based on biological functions makes a closure, due to the circular causality of living systems, which makes every reference to human intentionality dispensable. To make this account clear, we can examine the following example:

In a fictive secret part of our world a civilisation of human beings with an impressive scientific knowledge existed. They constructed impressive machine-like entities, which were capable of moving around and do things, but not to (re)produce, maintain and organise themselves. Using artificial organic materials they also constructed some bacteria-like living entities, which were able to absolve self-production, self-maintenance and self-organisation. This civilisation was destroyed without leaving anything but these two kinds of entities. We now find these entities, without knowledge of the past civilisation, and try to explain them. The explanation of the machine-like entities is ad-hoc not possible at all. One could try to explain them under the terms of their physical structures, but certainly without luck. One would probably make an ‘inference to the best explanation’ and, because these functioning machine-like entities cannot (re)produce, maintain and organise themselves, conclude that they were made by intentional beings. In contrast, no reference to human intentionality is needed by the explanation of the bacteria-like entities. A sufficient explanation of these entities can be given by just referring to the circular causality they own. The ahistorical circular causality makes any external cause unnecessary. These considerations show that in the moment in which we are capable of ascribing biological functions to an entity, all references to an ‘intelligent designer’ to explain this entity in itself is dispensable. Therefore, we conclude that the ascription of technical functions to the products of synthetic biology is only possible regarding a human context, but not if we want to describe what they are in themselves. Thus, it is not warranted to say that the synthetic entities follow a ‘human aim’. Moreover, this analysis allows a clear distinction between machines and living beings, making the expression ‘living machine’ necessary a metaphor.

Publications we worked with:

[20] Vermaas, PE (2006): The physical connection: Engineering function ascriptions to technical artefacts and their components. Stud Hist Philos Sci A 37: 62-75
[21] Vermaas, PE, Houkes, W (2006): Technical functions: A drawbridge between the intentional and structural natures of technical artefacts. Stud Hist Philos Sci 37: 5-18
[22] McLaughlin, P (2001): What Functions Explain. Functional Explanation and Self-reproducing Systems. Cambridge University Press, Cambridge
[23] Mossio M, Saborido C, Moreno A (2009): An Organizational Account of Biological Functions. Br J Philos Sci 60(4): 813-841
[24] Saborido C, Mossio M, Moreno A (2011). Biological organization and cross-generation functions. Br J Philos Sc, 62: 583-606

Finally, we discussed in our last meeting about the implications of our epistemological analysis for the synthetic biology and for society. In addition we studied different ethical approaches and tried to apply them to the products of synthetic biology ([17],[18],[25],[26]). Many of the approaches failed to justify if the synthesised entities have a moral status or not, revealing the necessity of novel bioethical theories. Some of our team members sympathises with Sune Holm’s biocentric view, because he also refers to the organisational account of biological functions for the foundation of his position ([18],[26]). Some other team members believe that the notion of a ‘natural purpose’ and the naturalisation of teleology and normativity (as the organisational account does) need further examination.

Publications we worked with:

[25] Krebs A (eds) (1997): Naturethik. Grundtexte der gegenwärtigen tier- und ökologischen Diskussion. Suhrkamp, Frankfurt a.M.
[26] Holm S (2011b): Biological Interests, Normative Functions and Synthetic Biology. Philos Technol doi:10.1007/s13347-012-0075-6