Team:LMU-Munich/Spore Coat Proteins

From 2012.igem.org

Revision as of 14:00, 19 September 2012

• Home
• Team
• Project
  • Why Beadzillus?
  • Bacillus Introduction
  • Bacillus BioBrickBox
  • GerminationSTOP
  • Sporobeads
  • Data
  • Applications
• Extras
  • Attributions
  • Collaborations
  • Registry
  • Bacillus Strains
  • Special: Inverter
  • Achievements
• Safety
  • Project Safety
  • Release for application
• Lab Notebook
  • Weekly Journal
  • Protocols
• Human Practice
  • SynBio Day
  • Students Practical Course
  • CAS SynBio Conference
  • Berlin Conference
• Sponsors

Spore Crust Proteins

The aim of this project part is to create spores that display fusion proteins on their crust. There are several different proteins forming the spore coat layers of Bacillus subtilis spores. On the outermost layer, the so called spore crust, the CotZ and CgeA proteins are located ([http://www.ncbi.nlm.nih.gov/pubmed?term=imamura%20et%20al.%202011%20spore%20crust Imamura et al., 2011]). This is why we used them to create functional fusion proteins to be expressed on our Sporobeads.

Protein distribution in spore coat of Bacillus subtilis

The gene cgeA is located in the cgeABCDE cluster and is regulated by its own promoter P_cgeA. The cluster cotVWXYZ contains the gene cotZ which is cotranscribed with cotY regulated by the promoter P_cotYZ. Another promoter of this cluster P_cotV is responsible for the transcription of the other three genes. Those three promoters were evaluated with lux reporter genes to get an impression of their time of activation and their strength (see for more details BacillusBioBrick Box) so they could be used for expression of spore crust fusion proteins.

The first step was to fuse gfp to cgeA and cotZ as a proof of principle. This way we would determine if it is possible to display proteins on the spore crust and if their expression has any effect on spore formation. Therefore we first fused cotZ to its two native promoters, P_cotV and P_cotYZ, and to P_cgeA, which regulates the transcription of cgeA. For cgeA we only used its native promoter P_cgeA and the stonger one of the two promoters of the cotVWXYZ cluster, P_cotYZ. While gfp was ligated to the terminator B0014 (see [http://partsregistry.org/wiki/index.php?title=Part:BBa_B0014 Registry]). When these constructs were finished and confirmed by sequencing, we fused them together applying the Freiburg standard to create in frame fusion proteins, flanked by one of the three promoters and the terminator.This way we created C-terminal fusion proteins.
But as we did not know if C- or N-terminal fusion would influence the fusion protein expression, our second aim was to construct N-terminal fusion proteins as well. For this purpose we wanted to fuse the genes for the crust proteins cotZ and cgeA to the terminator and gfp to the three chosen promoters. Unsuccessfully, there occured a mutation in the XbaI site during construction of gfp in Freiburg Standard which is why we were not able to finish these constructs.

Scheme of variants of the final fusion constructs Promoter-Crust Protein-GFP-Terminator

As we are working with B. subtilis spores, we needed to clone our final constructs into an empty Bacillus vector, so that they could get integrated into the genome of B. subtilis after transformation. Thus we picked the empty vector pSB_BS1C from our BacillusBioBrickBox, for the cotZ constructs. This vector integrates into the amyE locus in the B. subtilis genome and therefore we checked the integration of our construct via a starch test. The clones with the right integrated constructs have then been chosen for further analysis. In oder to express both crust protein constructs in one strain the cgeA fusion proteins had to be cloned into one of the other empty vectors. Unfortunately for unknown reasons, the cloning of the constructs with cgeA into this vector have been unsuccessful so far.

We were able to construct 5 B. subtilis strains with the following constructs integrated into the amyE locus:
P_cotYZ-cotZre-gfp-termiantor
P_cotYZ-cotZin-gfp-termiantor
P_cotV-cotZre-gfp-termiantor
P_cotV-cotZin-gfp-termiantor
P_cgeA-cotZre-gfp-termiantor

Finally we could start with the important experiment for our GFP-Sporobeads, fluorescence microscopy. Therefore we developed a sporulation protocol, that increases the rates of mature spores in our mutant samples (for details see link). The cells were fixed on agarose-pads and imaged in bright field and excited in blue wavelength.

Because of the low but distinct fluorescence of wildtype sores, we measured and compared the fluorescence intensity of 100 spores per mutant. As you can see in the following graph, a significant difference was obtained. However we worked with the PcotYZ-CotZ-GFP-Terminator spores for further experiments as these showed the brightest fluorescence. In these experiments we had three different aims.
The first one was to show that the fusion proteins are really located on the outermost layer. Therefore we investiagted the fluoerscence of our spores after treatment with proteinase K and FRAP (fluorescence recovery after photobleaching).
The second aim was to purify the Sporobeads from vegetative cells, which thereby should be deaden. We chose three different methods for this approach, the treatment with French Press, ultrasound (sonification) or lysozyme.

Project Navigation

+--+--+--+--+--+--+--	+--+--+--+--+--	+--+--+--+--+--+--	+--+--+--+--+--+--
Bacillus Intro	Bacillus BioBrickBOX	SporeCoat FusionProteins	Germination STOP