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Team:USP-UNESP-Brazil/Plasmid Plug n Play/Introduction
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| - | + | This project goal is to build a machine for producing proteins (called Plug & Play). This machine will be a tool for rapid protein expression, which would decrease the time used in screening candidate genes that could encode proteins with functions of biological interest. It only uses parts found in the Registry of Standard Biological Parts created by the iGEM competition, allowing its free use by the synthetic biology community. | |
| - | + | As a proof of concept we proposed to build a single plasmid that allows any protein in ''E. coli'' expression in two steps: PCR (Polymerase Chain Reaction) and transformation. The system is based on the Cre recombinase protein that catalyzes DNA recombination between specific sites. | |
| - | The Plug & Play system has two parts; | + | The Plug & Play system has two parts; |
| - | i) primers for amplifying | + | i) primers for amplifying the desired ORF (open reading frame) sequence flanked by the recombination sequences lox66 and lox66, recognized by the Cre recombinase. |
| - | ii) a receptor plasmid that uses the Cre recombination mechanism to insert the sequence amplified by PCR in a specific place, which already posses all the necessary machinery to express the protein. | + | ii) a receptor plasmid that uses the Cre recombination mechanism to insert the sequence amplified by PCR in a specific place (lox71 site), which already posses all the necessary machinery to express the protein. |
Revision as of 22:04, 18 September 2012
This project goal is to build a machine for producing proteins (called Plug & Play). This machine will be a tool for rapid protein expression, which would decrease the time used in screening candidate genes that could encode proteins with functions of biological interest. It only uses parts found in the Registry of Standard Biological Parts created by the iGEM competition, allowing its free use by the synthetic biology community.
As a proof of concept we proposed to build a single plasmid that allows any protein in E. coli expression in two steps: PCR (Polymerase Chain Reaction) and transformation. The system is based on the Cre recombinase protein that catalyzes DNA recombination between specific sites.
The Plug & Play system has two parts;
i) primers for amplifying the desired ORF (open reading frame) sequence flanked by the recombination sequences lox66 and lox66, recognized by the Cre recombinase.
ii) a receptor plasmid that uses the Cre recombination mechanism to insert the sequence amplified by PCR in a specific place (lox71 site), which already posses all the necessary machinery to express the protein.
FIGURA:::::::::::::::::::::
We design 3 versions of the plasmid to be tested; one using a low copy number plasmid (pSB4A5), one using a high copy number plasmid (pSB1C3) and one using a commercial high copy number (pGEM). These versions allow us to compare which could be the best system for developing this technology.
The levels of Cre expressed are critical for the system performance, for this reason we created an A (Cre-Lox71) and B (Lox-Cre) constructions from each of the three plasmid versions. We wanted to test if the insertion of the target gene upstream or downstream the Cre gene in the receptor plasmid could affect the efficiency of the expression.
