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Team:KIT-Kyoto/c6h12o6
From 2012.igem.org
(Difference between revisions)
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1. Reproduction of DNA from gel<br> | 1. Reproduction of DNA from gel<br> | ||
We did agarose gel electrophoresis (0.7% gel).<br><br> | We did agarose gel electrophoresis (0.7% gel).<br><br> | ||
| - | + | Composition | |
<Table Border Cellspacing="0"> | <Table Border Cellspacing="0"> | ||
<Tr><Td></Td><Td>a product of PCR attB TNFAIP3(8/1) </Td></Tr> | <Tr><Td></Td><Td>a product of PCR attB TNFAIP3(8/1) </Td></Tr> | ||
Revision as of 23:58, 15 September 2012
1 August
| sample1 | |
| 10ng/μL TNFAIP3 | 6μL |
| 10× KOD plus buffer | 10μL |
| 2mM dNTPs | 10μL |
| 25mM MgSO4 | 3.2μL |
| 10P 5'primer | 3μL |
| 10P 3'primer | 3μL |
| KOD plus | 2μL |
| dH2O | 62.8μL |
| total | 100μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 25cycle |
| 60°C | 30sec | 25cycle |
| 68°C | 2min30sec | 25cycle |
| 68°C | 2min30sec | |
| 14°C | ∞ |
| sample1 | sample2 | sample3 | sample4 | |
| 10ng/μL API2-MALT1 | 2μL | 2μL | 1μL | 1μL |
| 10× KOD plus buffer | 2μL | 2μL | 2μL | 2μL |
| 2mM dNTPs | 2μL | 2μL | 2μL | 2μL |
| 25mM MgSO4 | 0.8μL | 0.8μL | 0.8μL | 0.8μL |
| 10P 5'primer | 0.6μL | 0.6μL | 0.6μL | 0.6μL |
| 10P 3'primer | 0.6μL | 0.6μL | 0.6μL | 0.6μL |
| KOD plus | 0.4μL | 0.4μL | 0.4μL | 0.4μL |
| dH2O | 11.6μL | 11.6μL | 12.6μL | 12.6μL |
| total | 20μL | 20μL | 20μL | 20μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 25cycle |
| 50°C(sample1,3)or55°C(sample2,4) | 30sec | 25cycle |
| 68°C | 3min30sec | 25cycle |
| 68°C | 3min30sec | |
| 14°C | ∞ |
2 August
| 1-2 | 1-3 | |
| DNA sample | 10μL | 20μL |
| 6×Dye | 2μL | 4μL |
| total | 12μL | 25μL |
| 1-2 | |
| DNA sample | 90μL |
| 6×Dye | 18μL |
| total | 108μL |
| 10ng/μL API2-MALT1 | 5μL |
| 10×KOD plus buffer | 10μL |
| 2mM dNTPs | 10μL |
| 25mM MgSO4 | 4μL |
| 10P 5'primer | 3μL |
| 10P 3'primer | 3μL |
| KOD plus | 2μL |
| dH2O | 63μL |
| total | 100μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 35cycle |
| 55°C | 30sec | 35cycle |
| 68°C | 3min30sec | 35cycle |
| 68°C | 3min30sec | |
| 14°C | ∞ |
Result
3 August
| attB TNFAIP3(80ng/μL) | 1μL |
| pDONR(455ng/μL) | 0.35μL |
| TE buffer | 7.65 |
| total | 9μL |
| sample1 | sample2 | |
| 10ng/μL AIP2-MALT1 | 2.5μL | 2.5μL |
| 10×KOD plus buffer | 5μL | 5μL |
| 2mM dNTPs | 5μL | 5μL |
| 25mM MgSO4 | 2μL | 2.4μL |
| 10P 5'primer | 1.5μL | 1.5μL |
| 10P 3'primer | 1.5μL | 1.5μL |
| KOD plus | 1μL | 1μL |
| dH2 | 31.5μL | 31.1μL |
| total | 50μL | 50μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 35cycle |
| 55°C | 30sec | 35cycle |
| 68°C | 3min30sec | 35cycle |
| 68°C | 3min30sec | |
| 14°C | ∞ |
4 August
5 August
6 August
7 August
| pDONR | BP TNFA-1 | BP TNFA-2 | |
| DNA sample | 1μL | 1μL | 1μL |
| 6×Dye | 1μL | 1μL | 1μL |
| dH2O | 4μL | 4μL | 4μL |
| total | 6μL | 6μL | 6μL |
| BP TNFA-2 | 2μL |
| pTFW(Destination vector) | 0.5μL |
| TE buffer | 6.5μL |
| total | 9μL |
8 August
9 Augus
| DNA sample | 1μL |
| 10×H buffer | 0.5μL |
| EcoRⅠ | 0.2μL |
| dH2O | 3.3μL |
| total | 5μL |
| 1-2 | |
| 50ng/μL LR TNFA-1 | 1μL |
| 10×rTaq buffer | 2μL |
| 2mM dNTPs | 2μL |
| 25mM MgCl2 | 0.8μL |
| 10P 5'primer | 0.6μL |
| 10P 3'primer | 0.6μL |
| rTaq | 0.4μL |
| dH2O | 12.6μL |
| total | 20μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 25cycle |
| 55°C | 30sec | 25cycle |
| 68°C | 2min30sec | 25cycle |
| 68°C | 2min30sec | |
| 14°C | ∞ |
10 August
11 August
12 August
13 August
| 1-1 | 1μL |
| 10×M buffer | 0.5μL |
| Hind Ⅲ | 0.2μL |
| dH2O | 3.3μL |
| total | 5μL |
14 August
| 1-1 | sample1 |
| 10ng/μL TNFAIP3 | 6μL |
| 10×KOD plus buffer | 10μL |
| 2mM dNTPs | 10μL |
| 25mM MgSO4 | 3.2μL |
| 10P 5'primer | 3μL |
| 10P 3'primer | 3μL |
| KOD plus | 2μL |
| dH2O | 62.8μL |
| total | 100μL |
| temperature | time | cycle |
| 95°C | 2min | |
| 95°C | 15sec | 25cycle |
| 60°C | 30sec | 25cycle |
| 68°C | 2min30sec | 25cycle |
| 68°C | 2min30sec | |
| 14°C | ∞ |
15 August
16 August
17 August
18 August
19 August
20 August
1. Reproduction of DNA from gel
We did agarose gel electrophoresis (0.7% gel).
Composition
| a product of PCR attB TNFAIP3(8/1) | |
| DNA sample | 90μL |
| 6×Dye | 18μL |
| Total | 108μL |
We separated 54uL×2 from 108uL (sample) and we did electrophoresis (54uL sample and 1kb marker 5uL).We separated gel containing DNA.
Results
We isolated DNA from these gels by QIA quick Gel Extraction Kit.
Finally we melt DNA to TE Buffer(40uL)
21 August
1. Density measurement of attB TNFAIP3
We did agarose gel electrophoresis (0.7% gel). (1kb marker-3uL, 5times dilution attB TNFAIP3-1uL (make August 20 ), 10times dilution-1uL, 1kb marker-2uL, 15times dilution-1uL, 20times dilution-1uL, 1kb marker-1uL )
Results We estimated attB TNFAIP3(we make this time) is 35ng/uL
2. BP reaction
We adjusted solution (vials) on 1.5mL tube to next composition.
| attB TNFAIP3(35ng/μL) | 2μL |
| pDONR(150ng/μL) | 1μL |
| TE buffer | 5μL |
| Total | 8μL |
We added BP Clonase Ⅱ enzyme mix-2uL to this vials.
We incubated these vials for 2hour at 25˚C. Next we did BP reaction
3. Transformation
We added BP TNFAIP3-2uL to XL1-Blue-100uL and we did Transformation.
Finally we spread 10uL, 40uL and 100uL on plate of LB Kanamycin(＋) and we keep 37℃ overnight.
22 August
We separated six colonies from 40uL spread plate of BP TNFAIP3 (make August 21 ) .
We cultivated these colonies on 2.5mL Kanamycin(＋) LB culture medium and we kept shaking this medium overnight.
