Team:NRP-UEA-Norwich/Theoretical Characterisation

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Revision as of 13:45, 15 September 2012

NRP UEA iGEM 2012

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Comparator Circuit Characterisation

. Short paragraph outlining comparator circuit

. Equation

Figure: Theoretical equation to measure the difference between expression levels of Construct 1 and 2

E = Proportion of rate of expression of Construct 1 when both constructs are expressed (i.e. there is knockdown of one construct) relative to the expression of Construct 1 when only Construct 1 is expressed.

A = The rate of transcription of Construct 1 as a proportion of the maximum transcription rate. As a proportion this is measured on a scale of 0 - 1. As an example if the rate of transcription is half of the maximum rate, rate would be 0.5 (arbituary units). It can be assumed the rate of transcription of construct 1 and 2 due to cellular components (e.g. RNA polymerase) is the same, however, the activation of transcription will affect the rate. The activation is reliant on the chemical species interacting with the promoter (i.e. nitric oxide,nitrates,nitrites to PyeaR). The '1' and '2' refer to the Construct 1 or 2 and hence the promoter and the measured fluorescence protein attached (e.g GFP, RFP, CFP, etc).

L = The length of the Construct 1 in the DNA form that is transcribed (i.e the leader and protein coding region).

C = The rate of transcription. Assuming the rate of transcription of Construct 1 and 2 are the same because the same ribosomes are involved.

Note: Leader refers to the section of RNA at the start of the mRNA that is not translated but has an affect on translation rate.

. Paragraphs on the breakdown of the equation

. Importance of parts:Length of the DNA strand affects the chance of interaction between the transcribing mRNA strands.

@@ Line 5: / Line 5: @@
 ==Comparator Circuit Characterisation==
+. Short paragraph outlining comparator circuit
-[[File:Equation.png| 300px | center]]
+. Equation
-Figure: Theoretical equation to measure the difference between expression levels of Construct 1 and 2
+[[File:Equation 1.png| 300px | center]]
+Figure: Theoretical equation to measure the difference between expression levels of Construct 1 and 2
+E = Proportion of rate of expression of Construct 1 when both constructs are expressed (i.e. there is knockdown of one construct) relative to the expression of Construct 1 when only Construct 1 is expressed.
+A = The rate of transcription of Construct 1 as a proportion of the maximum transcription rate. As a proportion this is measured on a scale of 0 - 1. As an example if the rate of transcription is half of the maximum rate, rate would be 0.5 (arbituary units). It can be assumed the rate of transcription of construct 1 and 2 due to cellular components (e.g. RNA polymerase) is the same, however, the activation of transcription will affect the rate. The activation is reliant on the chemical species interacting with the promoter (i.e. nitric oxide,nitrates,nitrites to PyeaR). The '1' and '2' refer to the Construct 1 or 2 and hence the promoter and the measured fluorescence protein attached (e.g GFP, RFP, CFP, etc).
+L = The length of the Construct 1 in the DNA form that is transcribed (i.e the leader and protein coding region).
+C = The rate of transcription. Assuming the rate of transcription of Construct 1 and 2 are the same because the same ribosomes are involved.
+Note: Leader refers to the section of RNA at the start of the mRNA that is not translated but has an affect on translation rate.
+. Paragraphs on the breakdown of the equation
+. Importance of parts:Length of the DNA strand affects the chance of interaction between the transcribing mRNA strands.