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Team:Bielefeld-Germany/Project/Appoach
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==Isolation and Generating of new BioBricks== | ==Isolation and Generating of new BioBricks== | ||
| - | The first step | + | The first step of our project is to isolate the specific gene sequences and to generate new BioBricks for the iGEM competition. |
The Laccases of the following organisms are isolated: | The Laccases of the following organisms are isolated: | ||
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| - | The | + | The additional and essential BioBricks and characteristics, which are used to design our functional plasmids and a new shuttle-vector-system are shown in the following table: |
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| - | + | Which expression system is used is determined by the folding and glycosylation of the individual laccase. | |
| - | The genetically modified organisms | + | The resulting genetically modified organisms produce the laccases for our approach. Further down the line, these laccases are isolated and purified. |
== Determining Activity and Potential of The Different Laccases == | == Determining Activity and Potential of The Different Laccases == | ||
Revision as of 18:15, 15 August 2012
Contents |
Approach
The conventional methods of sewage treatment plants to take care of waste water are insufficient. This is, because the most common micro contaminants like synthetic estrogen, Bisphenol A, Dicolfenac etc. are very difficult to break down. The goal of Bielefeld’s iGEM team is to develop a biological filter-system using immobilized laccases to purify municipal and industrial waste water from these synthetic estrogens and other aromatic compounds. Laccases are copper-containing oxidase enzymes found in many organisms. One of their properties is the ability to break down a wide range of aromatic and phenolic compounds. For this purpose, genes of various bacterial and eukaryotic laccases will be isolated and expressed in Escherichia coli and Pichia pastoris. The choice of the expression-system depends on the glycosylation status of the enzyme.
Isolation and Generating of new BioBricks
The first step of our project is to isolate the specific gene sequences and to generate new BioBricks for the iGEM competition. The Laccases of the following organisms are isolated:
bacterial laccases:
- Escherichia Coli
- Bacillus Halodurans
- Bacillus Pumilus
- Streptomyces griseus
- Streptomyces lavendulae
- Thermus thermophilus
- Xanthomonas campestris
Eukaryota laccases:
- Arabidopsis thaliana
- Trametes versicolor
- Trametes villosa
For more information about the Organisms click here.
The additional and essential BioBricks and characteristics, which are used to design our functional plasmids and a new shuttle-vector-system are shown in the following table:
Parts of the E.coli Expressionvector and the P.Pastoris Shuttle-Vector
| Plasmid Characteristics | Shuttlevector Characteristics |
|---|---|
| T7 Promotorregion | AOX-Promotor |
| His-Tag-Sequence | alpha-factor |
| Chloramphenicol Resistance | Zeocin Resistance |
Which expression system is used is determined by the folding and glycosylation of the individual laccase. The resulting genetically modified organisms produce the laccases for our approach. Further down the line, these laccases are isolated and purified.
Determining Activity and Potential of The Different Laccases
| The next step to generate a effeciantally filter system is to characterize different produced and purified laccases. To identify the potential of different laccases, the enzyme are examined on their activity and the potential to degrade different substances. The degradation potential of different laccases are investigate for representative substances from different chemical areas like analgetics, endocrine substances, pesticides, poly aromatic hydrocarbons and bleaching agents.
In this case we analyses the efficiency of the laccase degradation and investigate different parameters like temperature, pH, and Buffer-systems. A great concern of our team is to guarantee the Safety of the generated filter system. Besides the degradation potential, a very important aspect is an analyzing of the degradated substances to guarantee, that the degradation with laccases don't generate any toxic or dangerous substances. These analyses realized by HPLC-massspectorscopy. With this knowledge we want to identify these laccase which show the highes potential for a functional filter system. |  |
Immobilization and the final Development of the Filter
The last step to realize our project is to immobilize the produced lacasses with the highest potentials. To generate a filter-system with a high yield of active and immobilized enzymes, different approaches are tested. On the one hand we try to immobilize the enzymes with a chemical immobilization protocol to bind covalent the laccases on specific silica-beads, and on the other hand we try to generate a natural immobilization protocols with different binding proteins like the cellulose-binding-protein or the chitin-binding-protein. By generating the new natural immobilization protocol two different cellulose-binding-protein are inverstigated ot the organisms Cellulomonas fimi, Clostridium josui and Clostridium cellulovorans. To investigate the bindicapacity and the bond strength of the different proteins at first the binding-proteins are linked with GFP (Green fluorescens Protein) and in the end with the lacasses.
The goal of the iGEM-Team Bielefeld is to generate a functional filter system with a high efficiency to degrade a high number of micro contaminants. If we are able to generate this filter systems, this system is able to reduce the environmental pollution and to improve the waterbody quality for animals and the mankind.
