Team:Johns Hopkins-Software/PathogenDetection

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<div id="project_temp">For our Human Practices component, we conducted BioBrick analysis using our software tools. Firstly, we created genbank files of each BioBrick with annotations generated from the Autogene database of features and found using our alignment software, and secondly, we searched the BioBrick repository for pathogenic sequences.<br><br><div id="title">BioBrick Analysis</div><br>Using Autogene's feature database and alignment software, we annotated the BioBricks in the repository. We are still in the process of creating the genbank files, but they will be available <a href = "http://ugrad.cs.jhu.edu/~escher1/autogene/genbank_files.html">here</a> when they are produced.<br><br><div id="title">Pathogen Detection Using Autogene</div><br>
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<div id="project_temp">For our Human Practices component, we conducted BioBrick analysis using our software tools. Firstly, we created genbank files of each BioBrick with annotations generated from the Autogene database of features and found using our alignment software, and secondly, we searched the BioBrick repository for pathogenic sequences.<br><br><div id="title">BioBrick Analysis</div><br>Using Autogene's feature database and alignment software, we annotated the BioBricks in the repository. We are still in the process of creating the genbank files, but they will be available <a href = "http://ugrad.cs.jhu.edu/~escher1/autogene/genbank_files.html">here</a> when they are produced.<br> <p>Using Autogene’s feature database and alignment algorithms, we also did some preliminary cross-analysis of our annotations with those provided by the Registry of Standard Biological Parts for 10 biobrick parts. We noticed that there were a few differences between our annotations, and the ones provided.   
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<p>Using Autogene’s feature database and alignment algorithms, we also did some preliminary cross-analysis of our annotations with those provided by the Registry of Standard Biological Parts for 10 biobrick parts. We noticed that there were a few differences between our annotations, and the ones provided.   
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A listing of the key differences can be found <a href = ""http://ugrad.cs.jhu.edu/~escher1/autogene/biobrick_annotations.html">here </a>.
A listing of the key differences can be found <a href = ""http://ugrad.cs.jhu.edu/~escher1/autogene/biobrick_annotations.html">here </a>.
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<br><br><div id="title">Pathogen Detection Using Autogene</div><br>
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As biological research becomes easier and easier with the development of new tools and increased understanding,  
As biological research becomes easier and easier with the development of new tools and increased understanding,  
there is also increased danger. Not only are many pathogen sequences freely available on the internet, but the DNA production process has become so simple and well understood, that any amateur biologist or hobbyist now has the ability to synthesize their own sequences. While in some ways this can be positive, the this also poses a clear threat, and exemplifies a need for an increase in pathogen detection tools.
there is also increased danger. Not only are many pathogen sequences freely available on the internet, but the DNA production process has become so simple and well understood, that any amateur biologist or hobbyist now has the ability to synthesize their own sequences. While in some ways this can be positive, the this also poses a clear threat, and exemplifies a need for an increase in pathogen detection tools.

Revision as of 23:31, 26 October 2012

For our Human Practices component, we conducted BioBrick analysis using our software tools. Firstly, we created genbank files of each BioBrick with annotations generated from the Autogene database of features and found using our alignment software, and secondly, we searched the BioBrick repository for pathogenic sequences.

BioBrick Analysis

Using Autogene's feature database and alignment software, we annotated the BioBricks in the repository. We are still in the process of creating the genbank files, but they will be available here when they are produced.

Using Autogene’s feature database and alignment algorithms, we also did some preliminary cross-analysis of our annotations with those provided by the Registry of Standard Biological Parts for 10 biobrick parts. We noticed that there were a few differences between our annotations, and the ones provided. A listing of the key differences can be found here .



Pathogen Detection Using Autogene

As biological research becomes easier and easier with the development of new tools and increased understanding, there is also increased danger. Not only are many pathogen sequences freely available on the internet, but the DNA production process has become so simple and well understood, that any amateur biologist or hobbyist now has the ability to synthesize their own sequences. While in some ways this can be positive, the this also poses a clear threat, and exemplifies a need for an increase in pathogen detection tools.

Most oligo production companies now screen their orders for pathogen sequences, but there are many online resources that have yet to be analyzed, including the BioBrick repository. For this reason, we decided to use our new software tools to search for pathogen sequences in the basic BioBrick sequences (defined as those under 1000 bases in length). People all over the world contribute to the BioBrick registry, and there is no algorithmic validation of their annotations, or of the safety of the uploaded features. As thousands of people use these sequences, this poses a great threat as, if a pathogenic sequence were uploaded, many people could be exposed to dangerous pathogens if the sequence were ever produced.

We used our software to search over 11,000 BioBricks for over 2,500 pathogen sequences, using DNA-based, Smith-Waterman alignments. While we did not find any matches in this subset of the BioBrick parts, we hope to continue our analysis on both these parts, and the rest of the registry, by using Amino Acid alignments. It is important to establish protocols of this nature for pathogen detection in large databases of sequences. Before DNA is produced, it is necessary to establish that it does not pose a threat to those who are producing it, or to anyone else who could be exposed.

A list of the BioBricks we analyzed:

BBa_K299006 BBa_K299007 BBa_K299008 BBa_K299009 BBa_K299010
BBa_K299011 BBa_K299012 BBa_K299013 BBa_K299014 BBa_K299020
BBa_K299021 BBa_K299022 BBa_K299023 BBa_K299024 BBa_K299025
BBa_K299026 BBa_K299027 BBa_K299028 BBa_K299029 BBa_K299030
BBa_K299100 BBa_K299101 BBa_K299102 BBa_K299104 BBa_K299110
BBa_K299111 BBa_K299112 BBa_K299113 BBa_K299114 BBa_K299115
BBa_K299116 BBa_K299117 BBa_K299120 BBa_K299121 BBa_K299122
BBa_K299123 BBa_K299124 BBa_K299125 BBa_K299126 BBa_K299127
BBa_K299400 BBa_K299806 BBa_K299807 BBa_K299808 BBa_K299817
BBa_K300002 BBa_K300003 BBa_K300004 BBa_K300005 BBa_K300009
BBa_K300025 BBa_K300026 BBa_K300027 BBa_K300028 BBa_K300029
BBa_K300030 BBa_K300031 BBa_K300032 BBa_K300079 BBa_K300080
BBa_K300081 BBa_K300983 BBa_K300991 BBa_K300998 BBa_K300999
BBa_K301001 BBa_K302000 BBa_K302001 BBa_K302002 BBa_K302003
BBa_K302005 BBa_K302006 BBa_K302007 BBa_K302008 BBa_K302009
BBa_K302010 BBa_K302011 BBa_K302012 BBa_K302013 BBa_K302023
BBa_K302031 BBa_K302032 BBa_K302033 BBa_K302034 BBa_K303002
BBa_K303006 BBa_K303007 BBa_K305000 BBa_K305001 BBa_K305002
BBa_K305003 BBa_K305004 BBa_K305005 BBa_K305006 BBa_K305007
BBa_K305008 BBa_K305012 BBa_K307106 BBa_K309000 BBa_K309002
BBa_K309005 BBa_K309006 BBa_K309007 BBa_K309010 BBa_K309012
BBa_K309013 BBa_K309016 BBa_K309017 BBa_K309018 BBa_K309019
BBa_K309020 BBa_K310000 BBa_K310001 BBa_K310002 BBa_K310003
BBa_K310004 BBa_K310006 BBa_K310007 BBa_K310008 BBa_K310009
BBa_K310010 BBa_K310011 BBa_K310012 BBa_K310013 BBa_K310014
BBa_K310017 BBa_K310024 BBa_K310025 BBa_K310026 BBa_K310027
BBa_K311002 BBa_K313000 BBa_K313001 BBa_K313003 BBa_K313007
BBa_K313028 BBa_K313030 BBa_K313033 BBa_K313034 BBa_K314100
BBa_K314101 BBa_K314102 BBa_K314110 BBa_K314200 BBa_K314201
BBa_K314202 BBa_K314444 BBa_K314901 BBa_K314974 BBa_K314981
BBa_K314982 BBa_K314986 BBa_K314987 BBa_K314988 BBa_K314989
BBa_K314990 BBa_K314991 BBa_K314992 BBa_K314993 BBa_K314994
BBa_K314997 BBa_K315000 BBa_K315008 BBa_K315016 BBa_K315022
BBa_K315024 BBa_K315026 BBa_K315027 BBa_K315028 BBa_K315029
BBa_K315030 BBa_K315045 BBa_K315047 BBa_K316000 BBa_K316011
BBa_K316012 BBa_K316016 BBa_K316017 BBa_K316018 BBa_K316019
BBa_K316030 BBa_K317000 BBa_K317030 BBa_K317031 BBa_K317036
BBa_K317037 BBa_K317998 BBa_K318011 BBa_K318021 BBa_K318022
BBa_K318025 BBa_K318026 BBa_K318027 BBa_K318028 BBa_K318029
BBa_K318030 BBa_K318500 BBa_K318501 BBa_K318503 BBa_K318506
BBa_K318509 BBa_K318510 BBa_K318511 BBa_K318512 BBa_K318514
BBa_K318516 BBa_K318517 BBa_K318900 BBa_K318902 BBa_K319000
BBa_K319001 BBa_K319002 BBa_K319003 BBa_K319004 BBa_K319005
BBa_K319006 BBa_K319008 BBa_K319009 BBa_K319010 BBa_K319011
BBa_K319012 BBa_K319013 BBa_K319014 BBa_K319015 BBa_K319016
BBa_K319017 BBa_K319018 BBa_K319019 BBa_K319020 BBa_K319021
BBa_K319022 BBa_K319023 BBa_K319024 BBa_K319025 BBa_K319026
BBa_K319027 BBa_K319028 BBa_K319029 BBa_K319030 BBa_K319031
BBa_K319035 BBa_K319036 BBa_K319038 BBa_K319039 BBa_K319044
BBa_K319045 BBa_K319046 BBa_K319047 BBa_K320005 BBa_K320007
BBa_K320013 BBa_K320015 BBa_K320016 BBa_K321002 BBa_K321003
BBa_K321004 BBa_K322007 BBa_K322115 BBa_K322117 BBa_A340620
BBa_B0015 BBa_K322705 BBa_B0017 BBa_K322706 BBa_K323001
BBa_K323002 BBa_K323003 BBa_B0025 BBa_K323004 BBa_K323006
BBa_K323007 BBa_K323009 BBa_K323010 BBa_K323011 BBa_K323012
BBa_K323013 BBa_K323015 BBa_K323016 BBa_K323017 BBa_K323023
BBa_K323027 BBa_K323032 BBa_K323037 BBa_K323041 BBa_K323049
BBa_B0100 BBa_K323055 BBa_K323057 BBa_B1101 BBa_B1102
BBa_B1103 BBa_B1104 BBa_K323062 BBa_K323063 BBa_B1105
BBa_B1106 BBa_B1107 BBa_K323065 BBa_B1108 BBa_B1109
BBa_K323067 BBa_B1110 BBa_K323068 BBa_K323069 BBa_B1201
BBa_B1202 BBa_K323071 BBa_B1203 BBa_B1204 BBa_K323072
BBa_B1205 BBa_K323073 BBa_B1206 BBa_B1207 BBa_K323075
BBa_B1208 BBa_K323076 BBa_K323077 BBa_B1209 BBa_B1210
BBa_K323078 BBa_K323079 BBa_K323082 BBa_K323088 BBa_K323105
BBa_K323106 BBa_C0011 BBa_K323107 BBa_K323108 BBa_K323109
BBa_C0020 BBa_C0028 BBa_C0040 BBa_K323113 BBa_C0041
BBa_C0050 BBa_C0051 BBa_C0052 BBa_C0053 BBa_K323117
BBa_K323118 BBa_C0056 BBa_C0060 BBa_C0061 BBa_K323121
BBa_C0062 BBa_C0070 BBa_C0071 BBa_C0072 BBa_C0073
BBa_C0074 BBa_C0075 BBa_C0076 BBa_K323131 BBa_C0077
BBa_C0078 BBa_C0079 BBa_C0080 BBa_C0081 BBa_K323136
BBa_C0090 BBa_C0100 BBa_C0160 BBa_C0161 BBa_C0170
BBa_C0171 BBa_C0176 BBa_C0177 BBa_C0178 BBa_C0179
BBa_C0260 BBa_C0261 BBa_C0361 BBa_C0362 BBa_C0378
BBa_C0379 BBa_C0400 BBa_C0410 BBa_C0440 BBa_C0450
BBa_K323217 BBa_K324001 BBa_C0490 BBa_K324053 BBa_K325000
BBa_K325102 BBa_K325202 BBa_C100013 BBa_C2000 BBa_C2001
BBa_C2002 BBa_C2003 BBa_C2004 BBa_C2005 BBa_K327000
BBa_C2030 BBa_C2031 BBa_K327005 BBa_C2032 BBa_C2033
BBa_C2034 BBa_C2040 BBa_C2041 BBa_C2042 BBa_C2043
BBa_C2044 BBa_C2045 BBa_C2100 BBa_C7053 BBa_C7077
BBa_K327018 BBa_E0010 BBa_K328000 BBa_E0020 BBa_K328001
BBa_E0021 BBa_E0022 BBa_K328003 BBa_E0024 BBa_K328004
BBa_E0026 BBa_K329001 BBa_E0029 BBa_E0030 BBa_K329002
BBa_E0031 BBa_E0032 BBa_E0033 BBa_K329005 BBa_E0034
BBa_K329006 BBa_E0035 BBa_K329007 BBa_E0036 BBa_E0038
BBa_E0040 BBa_E0041 BBa_E0042 BBa_E0043 BBa_E0044
BBa_K329015 BBa_E0050 BBa_E0051 BBa_E0130 BBa_E0224
BBa_E0226 BBa_E0234 BBa_E0236 BBa_E0240 BBa_E0241
BBa_K329024 BBa_E0244 BBa_K329025 BBa_E041010 BBa_K329026
BBa_E0420 BBa_E0422 BBa_E0424 BBa_E0426 BBa_E0430
BBa_E0432 BBa_E0433 BBa_E0434 BBa_E0435 BBa_E0436
BBa_E0438 BBa_K329038 BBa_K329039 BBa_K329041 BBa_K329042
BBa_K329043 BBa_K329044 BBa_K329045 BBa_K329046 BBa_K329047
BBa_K329048 BBa_K329049 BBa_K329050 BBa_E0840 BBa_E0844
BBa_E1010 BBa_E1011 BBa_E1040 BBa_E2020 BBa_E2021
BBa_E2030 BBa_E2050 BBa_K329063 BBa_E2060 BBa_K329064
BBa_K329065 BBa_E2215 BBa_E3030 BBa_E5500 BBa_E5501
BBa_E5502 BBa_E5503 BBa_E5504 BBa_K330001 BBa_E70101
BBa_K331000 BBa_E70102 BBa_E70103 BBa_K331001 BBa_E70201
BBa_K331002 BBa_E70202 BBa_E70203 BBa_E70301 BBa_E70302
BBa_E70303 BBa_E7103 BBa_E7104 BBa_E7105 BBa_K331010
BBa_E7106 BBa_K331011 BBa_E7107 BBa_E7108 BBa_E71101
BBa_E71102 BBa_E71103 BBa_E71104 BBa_E71201 BBa_E71202
BBa_E71203 BBa_K331020 BBa_E71204 BBa_E71205 BBa_K331021
BBa_E71206 BBa_K331022 BBa_E71208 BBa_K331023 BBa_K331024
BBa_E71211 BBa_K331025 BBa_E71214 BBa_K331026 BBa_E71301
BBa_K331027 BBa_E71302 BBa_K331028 BBa_E71303 BBa_F1610
BBa_K331029 BBa_F1611 BBa_K331030 BBa_F1700 BBa_K331031
BBa_K331032 BBa_F1760 BBa_K331033 BBa_F1780 BBa_K331034
BBa_K331035 BBa_K331036 BBa_K331037 BBa_K332021 BBa_K332022
BBa_K332031 BBa_K332033 BBa_K332034 BBa_K334000 BBa_K336006
BBa_K336008 BBa_K336016 BBa_K336021 BBa_K336047 BBa_K336100
BBa_K337000 BBa_K337001 BBa_I0040 BBa_K337002 BBa_K337003
BBa_K337004 BBa_K337005 BBa_K337006 BBa_K337007 BBa_K337008
BBa_K337009 BBa_K337010 BBa_K337011 BBa_I0410 BBa_K337012
BBa_I0411 BBa_K337013 BBa_I0412 BBa_K337014 BBa_I0413
BBa_I0414 BBa_K337016 BBa_I0415 BBa_K337017 BBa_I0416
BBa_K337018 BBa_I0417 BBa_K337019 BBa_I0418 BBa_I0419
BBa_I0420 BBa_I0421 BBa_K337025 BBa_K337027 BBa_I0460
BBa_K337028 BBa_I0462 BBa_I0464 BBa_I0466 BBa_I0468
BBa_I1000 BBa_I10000 BBa_I10003 BBa_I10004 BBa_K337039
BBa_I10009 BBa_I10013 BBa_I10017 BBa_I10042 BBa_I10074
BBa_K337051 BBa_I10087 BBa_I10088 BBa_I1009 BBa_I10099
BBa_I1010 BBa_I10100 BBa_K337058 BBa_I10101 BBa_K337059
BBa_I1011 BBa_K337060 BBa_K337061 BBa_I1012 BBa_K337062
BBa_K337063 BBa_I1013 BBa_I1020 BBa_K337064 BBa_I10200
BBa_K337065 BBa_I1021 BBa_K337066 BBa_I1022 BBa_K337067
BBa_I1023 BBa_K337068 BBa_I10254 BBa_K337069 BBa_I1030
BBa_K337070 BBa_I1031 BBa_K337071 BBa_I1032 BBa_K337072
BBa_I10320 BBa_K337073 BBa_I1033 BBa_K337074 BBa_K337075
BBa_I10337 BBa_K337076 BBa_I1034 BBa_K337077 BBa_I1040
BBa_K337078 BBa_K337079 BBa_I1041 BBa_K337080 BBa_I1042
BBa_K337081 BBa_I1044 BBa_K337082 BBa_K337083 BBa_I10499
BBa_K337084 BBa_I10500 BBa_K337085 BBa_K337086 BBa_K337087
BBa_I1060 BBa_K337088 BBa_I1063 BBa_K337089 BBa_K337090
BBa_K337091 BBa_I1070 BBa_K337092 BBa_K337093 BBa_I10900
BBa_K337094 BBa_K337095 BBa_I10901 BBa_K337096 BBa_K337097
BBa_K337098 BBa_K337099 BBa_K337100 BBa_I11002 BBa_K337101
BBa_K337102 BBa_K337103 BBa_K337104 BBa_K337105 BBa_K338001
BBa_K338002 BBa_K338023 BBa_I11013 BBa_I11021 BBa_K338029
BBa_K338042 BBa_I11023 BBa_K338046 BBa_K338081 BBa_I11031
BBa_I11033 BBa_I11041 BBa_K339006 BBa_I11043 BBa_K339007
BBa_I11051 BBa_K339010 BBa_I11053 BBa_K339015 BBa_K341000
BBa_K341001 BBa_K341004 BBa_K341005 BBa_K341006 BBa_K341445
BBa_K341446 BBa_K341449 BBa_K341450 BBa_K341451 BBa_I12014
BBa_I12015 BBa_I12017 BBa_K341555 BBa_K341666 BBa_I12024
BBa_I12026 BBa_I12032 BBa_I12033 BBa_I12034 BBa_I12035
BBa_K341709 BBa_I12038 BBa_K341715 BBa_K341716 BBa_K341717
BBa_K341718 BBa_K341719 BBa_K341720 BBa_I12054 BBa_K342003
BBa_K343000 BBa_I12100 BBa_I12200 BBa_K343100 BBa_I12202
BBa_I12203 BBa_I12205 BBa_K345667 BBa_K346001 BBa_I12222
BBa_K346003 BBa_I12223 BBa_K346004 BBa_K346006 BBa_K346008
BBa_K346009 BBa_K346010 BBa_K346011 BBa_K346012 BBa_K346013
BBa_K346014 BBa_K346015 BBa_I13000 BBa_K346017 BBa_I13001
BBa_K346018 BBa_I13002 BBa_K346019 BBa_I13003 BBa_K346020
BBa_I13004 BBa_K346021 BBa_I13005 BBa_K346022 BBa_I13006
BBa_K346023 BBa_I13007 BBa_K346024 BBa_I13008 BBa_K346025
BBa_K346026 BBa_I13009 BBa_I13010 BBa_K346027 BBa_I13011
BBa_K346028 BBa_I13012 BBa_K346029 BBa_I13013 BBa_I13014
BBa_K346031 BBa_K346032 BBa_K346033 BBa_I13018 BBa_K346034
BBa_K346036 BBa_I13025 BBa_I13026 BBa_I13027 BBa_I13028
BBa_I13029 BBa_I13030 BBa_I13031 BBa_I13032 BBa_I13033
BBa_I13062 BBa_K346055 BBa_I13072 BBa_K346056 BBa_K346057
BBa_K346058 BBa_K346062 BBa_K346067 BBa_K346068 BBa_K346069
BBa_K346070 BBa_K346071 BBa_K346072 BBa_K346073 BBa_K346074
BBa_K346075 BBa_K346076 BBa_K346077 BBa_I13200 BBa_K346078
BBa_K346079 BBa_I13202 BBa_K346080 BBa_K346081 BBa_K346082
BBa_K346083 BBa_I13206 BBa_K346086 BBa_I13208 BBa_K346087
BBa_K346088 BBa_I13220 BBa_K346096 BBa_I13262 BBa_K349005
BBa_K349006 BBa_K349007 BBa_K349008 BBa_K349009 BBa_K349010
BBa_K349011 BBa_K349012 BBa_K349101 BBa_K349102 BBa_K349105
BBa_K349106 BBa_K349108 BBa_K349112 BBa_I13401 BBa_K349113
BBa_K349114 BBa_K349115 BBa_K349116 BBa_K349118 BBa_K349119
BBa_K349301 BBa_K349302 BBa_I13409 BBa_I13411 BBa_K351000
BBa_K351001 BBa_I13453 BBa_K351002 BBa_I13457 BBa_K351006
BBa_K351007 BBa_I13500 BBa_I13501 BBa_K351008 BBa_K351009
BBa_I13502 BBa_K351010 BBa_I13503 BBa_I13504 BBa_K352001
BBa_I13507 BBa_I13510 BBa_I13511 BBa_K352008 BBa_K352009
BBa_K352010 BBa_K352011 BBa_K352012 BBa_K352013 BBa_K352014
BBa_I13518 BBa_I13519 BBa_I13521 BBa_I13522 BBa_I13523
BBa_I13524 BBa_I13525 BBa_I13526 BBa_I13527 BBa_I13528
BBa_K354000 BBa_I13535 BBa_K354002 BBa_K354004 BBa_K356101
BBa_K356102 BBa_K356103 BBa_K357000 BBa_K357002 BBa_K357003
BBa_K357004 BBa_K357005 BBa_K357006 BBa_K358000 BBa_K358001
BBa_K358012 BBa_K358013 BBa_I13563 BBa_I13570 BBa_I13571
BBa_I13572 BBa_I13573 BBa_I13574 BBa_I13575 BBa_I13576
BBa_I13578 BBa_I13580 BBa_K359003 BBa_I13600 BBa_I13601
BBa_I13602 BBa_I13603 BBa_K360010 BBa_K360021 BBa_K360022
BBa_K360052 BBa_K360100 BBa_K360112 BBa_K360121 BBa_K360122
BBa_K360123 BBa_K360124 BBa_K360126 BBa_K360127 BBa_K360128
BBa_K360129 BBa_K360141 BBa_K360142 BBa_K360143 BBa_I13710
BBa_K361001 BBa_K362000 BBa_K362002 BBa_I13800 BBa_I13801
BBa_I13850 BBa_K362006 BBa_I13851 BBa_I13910 BBa_I13911
BBa_I13912 BBa_I13913 BBa_I13914 BBa_I13915 BBa_I13970
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BBa_S04032 BBa_S03754 BBa_S04034 BBa_S03756 BBa_S03757
BBa_S03759 BBa_S04036 BBa_S03760 BBa_S03761 BBa_S03764
BBa_S03767 BBa_S03768 BBa_S04043 BBa_S03769 BBa_S03770
BBa_S04044 BBa_S04045 BBa_S03773 BBa_S03774 BBa_S04046
BBa_S03775 BBa_S04047 BBa_S03776 BBa_S04048 BBa_S03777
BBa_S04049 BBa_S03778 BBa_S03779 BBa_S03783 BBa_S03784
BBa_S03788 BBa_S04061 BBa_S03798 BBa_S03799 BBa_S03800
BBa_S03801 BBa_S03802 BBa_S03803 BBa_S04068 BBa_S03804
BBa_S04069 BBa_S03805 BBa_S04070 BBa_S03806 BBa_S04078
BBa_S04079 BBa_S04080 BBa_S03820 BBa_S03822 BBa_S04088
BBa_S03831 BBa_S03832 BBa_S03834 BBa_S03835 BBa_S03836
BBa_S03841 BBa_S03842 BBa_S03848 BBa_S03849 BBa_S03850
BBa_S03851 BBa_S04103 BBa_S03852 BBa_S03853 BBa_S03854
BBa_S03855 BBa_S03856 BBa_S03857 BBa_S03858 BBa_S03859
BBa_S03862 BBa_S0411 BBa_S03863 BBa_S03864 BBa_S03865
BBa_S03866 BBa_S03867 BBa_S04115 BBa_S03870 BBa_S04116
BBa_S03873 BBa_S03874 BBa_S04119 BBa_S03875 BBa_S03876
BBa_S0412 BBa_S03877 BBa_S04120 BBa_S03878 BBa_S03879
BBa_S04121 BBa_S03880 BBa_S03881 BBa_S03882 BBa_S03883
BBa_S04125 BBa_S03885 BBa_S04126 BBa_S03886 BBa_S03887
BBa_S03888 BBa_S03889 BBa_S03890 BBa_S03891 BBa_S03892
BBa_S03893 BBa_S03894 BBa_S03895 BBa_S04134 BBa_S03896
BBa_S03897 BBa_S03898 BBa_S04136 BBa_S03899 BBa_S03900
BBa_S04137 BBa_S03901 BBa_S03902 BBa_S03903 BBa_S04139
BBa_S03904 BBa_S03905 BBa_S03906 BBa_S03907 BBa_S03908
BBa_S03916 BBa_S04148 BBa_S03917 BBa_S03918 BBa_S04150
BBa_S03919 BBa_S03920 BBa_S03923 BBa_S04159 BBa_S03932
BBa_S04160 BBa_S03948 BBa_S03954 BBa_S03955 BBa_S03957
BBa_S03962 BBa_S03966 BBa_S03967 BBa_S03968 BBa_S03969
BBa_S04180 BBa_S03976 BBa_S04181 BBa_S03982 BBa_S03983
BBa_S04187 BBa_S04188 BBa_S03989 BBa_S03990 BBa_S03991
BBa_S03992 BBa_S03993 BBa_S03994 BBa_S03995 BBa_S03996
BBa_S04196 BBa_S03997 BBa_S03998 BBa_S04197 BBa_S03999
BBa_S04198 BBa_S04000 BBa_S04001 BBa_S04199 BBa_S04002
BBa_S04200 BBa_S04201 BBa_S04004 BBa_S04005 BBa_S04006
BBa_S04007 BBa_S04008 BBa_S04009 BBa_S04205 BBa_S04013
BBa_S04014 BBa_S04015 BBa_S04211 BBa_S04212 BBa_S04020
BBa_S04213 BBa_S04021 BBa_S04217 BBa_S04218 BBa_S04029
BBa_S04030 BBa_S04032 BBa_S04224 BBa_S04034 BBa_S04225
BBa_S04226 BBa_S04036 BBa_S04227 BBa_S04228 BBa_S04229
BBa_S04230 BBa_S04231 BBa_S04043 BBa_S04232 BBa_S04044
BBa_S04233 BBa_S04045 BBa_S04046 BBa_S04047 BBa_S04235
BBa_S04048 BBa_S04236 BBa_S04049 BBa_S04241 BBa_S04061
BBa_S04248 BBa_S04249 BBa_S04068 BBa_S04250 BBa_S04069
BBa_S04070 BBa_S04252 BBa_S04255 BBa_S04257 BBa_S04078
BBa_S04079 BBa_S04080 BBa_S04259 BBa_S04260 BBa_S04261
BBa_S04263 BBa_S04264 BBa_S04088 BBa_S04265 BBa_S04266
BBa_S04267 BBa_S04268 BBa_S04269 BBa_S04270 BBa_S04271
BBa_S04274 BBa_S04275 BBa_S04103 BBa_S04276 BBa_S04277
BBa_S04278 BBa_S04279 BBa_S04280 BBa_S0411 BBa_S04281
BBa_S04282 BBa_S04283 BBa_S04115 BBa_S04116 BBa_S04119
BBa_S0412 BBa_S04120 BBa_S04121 BBa_S04125 BBa_S04126
BBa_S04299 BBa_S04301 BBa_S04134 BBa_S04136 BBa_S04304
BBa_S04137 BBa_S04139 BBa_S04306 BBa_S04309 BBa_S04312
BBa_S04148 BBa_S04314 BBa_S04150 BBa_S04315 BBa_S04318
BBa_S04320 BBa_S04159 BBa_S04321 BBa_S04160 BBa_S04326
BBa_S04328 BBa_S04329 BBa_S04330 BBa_S04331 BBa_S04332
BBa_S04333 BBa_S04180 BBa_S04181 BBa_S04334 BBa_S04335
BBa_S04336 BBa_S04337 BBa_S04338 BBa_S04187 BBa_S04188
BBa_S04339 BBa_S04340 BBa_S04341 BBa_S04342 BBa_S04343
BBa_S04196 BBa_S04197 BBa_S04198 BBa_S04199 BBa_S04200
BBa_S04201 BBa_S04205 BBa_S04353 BBa_S04354 BBa_S04355
BBa_S04211 BBa_S04212 BBa_S04213 BBa_S04217 BBa_S04218
BBa_S04363 BBa_S04364 BBa_S04365 BBa_S04367 BBa_S04224
BBa_S04225 BBa_S04226 BBa_S04227 BBa_S04228 BBa_S04229
BBa_S04230 BBa_S04231 BBa_S04374 BBa_S04232 BBa_S04233
BBa_S04235 BBa_S04236 BBa_S04241 BBa_S04383 BBa_S04384
BBa_S04385 BBa_S04248 BBa_S04386 BBa_S04249 BBa_S04250
BBa_S04252 BBa_S04255 BBa_S04257 BBa_S04259 BBa_S04260
BBa_S04394 BBa_S04261 BBa_S04263 BBa_S04264 BBa_S04265
BBa_S04266 BBa_S04267 BBa_S04268 BBa_S04269 BBa_S04270
BBa_S04271 BBa_S04403 BBa_S04274 BBa_S04404 BBa_S04275
BBa_S04276 BBa_S04405 BBa_S04277 BBa_S04278 BBa_S04406
BBa_S04279 BBa_S04280 BBa_S04281 BBa_S04282 BBa_S04283
BBa_S04418 BBa_S04419 BBa_S04299 BBa_S04301 BBa_S04304
BBa_S04424 BBa_S04306 BBa_S04425 BBa_S04426 BBa_S04309
BBa_S04429 BBa_S04430 BBa_S04312 BBa_S04314 BBa_S04315
BBa_S04433 BBa_S04434 BBa_S04318 BBa_S04320 BBa_S04321
BBa_S04438 BBa_S04439 BBa_S04440 BBa_S04326 BBa_S04441
BBa_S04328 BBa_S04442 BBa_S04329 BBa_S04330 BBa_S04331
BBa_S04444 BBa_S04332 BBa_S04445 BBa_S04333 BBa_S04334
BBa_S04446 BBa_S04335 BBa_S04336 BBa_S04447 BBa_S04337
BBa_S04338 BBa_S04339 BBa_S04340 BBa_S04341 BBa_S04450
BBa_S04342 BBa_S04451 BBa_S04343 BBa_S04452 BBa_S04453
BBa_S04353 BBa_S04354 BBa_S04355 BBa_S04363 BBa_S04364
BBa_S04365 BBa_S04467 BBa_S04468 BBa_S04367 BBa_S04374
BBa_S04383 BBa_S04384 BBa_S04385 BBa_S04386 BBa_S04394
BBa_S04479 BBa_S04480 BBa_S04403 BBa_S04404 BBa_S04405
BBa_S04406 BBa_S04487 BBa_S04490 BBa_S04491 BBa_S04492
BBa_S04493 BBa_S04418 BBa_S04419 BBa_S04424 BBa_S04425
BBa_S04426 BBa_S04429 BBa_S04430 BBa_S04433 BBa_S04434
BBa_S04508 BBa_S04438 BBa_S04509 BBa_S04439 BBa_S04440
BBa_S04441 BBa_S04511 BBa_S04442 BBa_S04444 BBa_S04445
BBa_S04446 BBa_S04447 BBa_S04450 BBa_S04451 BBa_S04452
BBa_S04453 BBa_S04520 BBa_S04521 BBa_S04527 BBa_S04467
BBa_S04468 BBa_S04534 BBa_S04535 BBa_S04479 BBa_S04480
BBa_S04537 BBa_S04539 BBa_S04540 BBa_S04541 BBa_S04487
BBa_S04543 BBa_S04490 BBa_S04491 BBa_S04492 BBa_S04493
BBa_S04508 BBa_S04559 BBa_S04509 BBa_S04511 BBa_S04561
BBa_S04564 BBa_S04565 BBa_S04566 BBa_S04567 BBa_S04520
BBa_S04521 BBa_S04571 BBa_S04572 BBa_S04573 BBa_S04527
BBa_S04574 BBa_S04575 BBa_S04576 BBa_S04577 BBa_S04534
BBa_S04535 BBa_S04537 BBa_S04582 BBa_S04539 BBa_S04540
BBa_S04583 BBa_S04541 BBa_S04584 BBa_S04543 BBa_S04587
BBa_S04588 BBa_S04559 BBa_S04561 BBa_S04564 BBa_S04565
BBa_S04566 BBa_S04602 BBa_S04567 BBa_S04603 BBa_S04571
BBa_S04572 BBa_S04573 BBa_S04607 BBa_S04574 BBa_S04575
BBa_S04609 BBa_S04576 BBa_S04577 BBa_S04612 BBa_S04613
BBa_S04614 BBa_S04582 BBa_S04583 BBa_S04618 BBa_S04584
BBa_S04619 BBa_S04621 BBa_S04587 BBa_S04588 BBa_S04624
BBa_S04625 BBa_S04626 BBa_S04627 BBa_S04631 BBa_S04602
BBa_S04603 BBa_S04607 BBa_S04636 BBa_S04637 BBa_S04609
BBa_S04638 BBa_S04639 BBa_S04612 BBa_S04640 BBa_S04613
BBa_S04614 BBa_S04641 BBa_S04642 BBa_S04643 BBa_S04644
BBa_S04618 BBa_S04645 BBa_S04619 BBa_S04646 BBa_S04621
BBa_S04648 BBa_S04624 BBa_S04625 BBa_S04626 BBa_S04627
BBa_S04631 BBa_S04654 BBa_S04655 BBa_S04636 BBa_S04637
BBa_S04638 BBa_S04639 BBa_S04640 BBa_S04641 BBa_S04642
BBa_S04643 BBa_S04644 BBa_S04645 BBa_S04646 BBa_S04648
BBa_S04673 BBa_S04675 BBa_S04654 BBa_S04655 BBa_S04677
BBa_S04673 BBa_S04696 BBa_S04675 BBa_S04677 BBa_S04715
BBa_S04716 BBa_S04717 BBa_S04696 BBa_S04718 BBa_S04719
BBa_S04725 BBa_S04726 BBa_S04727 BBa_S04730 BBa_S04731
BBa_S04715 BBa_S04716 BBa_S04717 BBa_S04740 BBa_S04718
BBa_S04719 BBa_S04743 BBa_S04744 BBa_S04745 BBa_S04746
BBa_S04725 BBa_S04726 BBa_S04727 BBa_S04730 BBa_S04731
BBa_S04756 BBa_S04740 BBa_S04743 BBa_S04744 BBa_S04745
BBa_S04746 BBa_S04756 BBa_S04997 BBa_S05001 BBa_S05007
BBa_S05008 BBa_S05009 BBa_S05010 BBa_S05011 BBa_S05012
BBa_S05013 BBa_S05014 BBa_S05015 BBa_S05016 BBa_S05017
BBa_S05018 BBa_S05019 BBa_S05020 BBa_S05021 BBa_S05022
BBa_S05023 BBa_S05024 BBa_S05025 BBa_S05026 BBa_S05027
BBa_S05028 BBa_S05029 BBa_S05030 BBa_S05031 BBa_S10000
BBa_S11451 BBa_S3910 BBa_S3911 BBa_T1000 BBa_T1002
BBa_T1003 BBa_T1004 BBa_T1005 BBa_T1006 BBa_T1007
BBa_T1009 BBa_T1010 BBa_T1012 BBa_S04997 BBa_S05001
BBa_S05007 BBa_S05008 BBa_T2025 BBa_T2028 BBa_S05009
BBa_S05010 BBa_T3333 BBa_S05011 BBa_S05012 BBa_S05013
BBa_S05014 BBa_S05015 BBa_T9012 BBa_S05016 BBa_T9100
BBa_T9101 BBa_S05017 BBa_S05018 BBa_T9150 BBa_S05019
BBa_S05020 BBa_S05021 BBa_S05022 BBa_T9501 BBa_S05023
BBa_T9502 BBa_S05024 BBa_S05025 BBa_S05026 BBa_S05027
BBa_S05028 BBa_S05029 BBa_S05030 BBa_S05031 BBa_S10000
BBa_S11451 BBa_S3910 BBa_S3911 BBa_T1000 BBa_T1002
BBa_T1003 BBa_T1004 BBa_X9999 BBa_T1005 BBa_Y00009
BBa_T1006 BBa_Y00029 BBa_T1007 BBa_T1009 BBa_Y1000
BBa_T1010 BBa_Y1001 BBa_Y1002 BBa_T1012 BBa_Y1004
BBa_Y1006 BBa_Y1007 BBa_Y1009 BBa_Y1010 BBa_Y1013
BBa_Y1014 BBa_Y1015 BBa_Y1016 BBa_Y2000 BBa_Z0101
BBa_Z0102 BBa_Z0103 BBa_Z0104 BBa_Z0105 BBa_Z0108
BBa_Z0110 BBa_Z0112 BBa_Z0113 BBa_Z0114 BBa_Z0115
BBa_Z0116 BBa_Z0117 BBa_Z0118 BBa_T2025 BBa_Z0119
BBa_T2028 BBa_Z0122 BBa_Z0123 BBa_T3333 BBa_Z0124
BBa_Z0126 BBa_Z0128 BBa_Z0130 BBa_Z0131 BBa_T9012
BBa_Z0135 BBa_Z0136 BBa_T9100 BBa_T9101 BBa_Z0138
BBa_Z0139 BBa_Z0140 BBa_T9150 BBa_Z0141 BBa_Z0142
BBa_Z0143 BBa_Z0144 BBa_Z0145 BBa_Z0146 BBa_Z0147
BBa_Z0148 BBa_Z0151 BBa_T9501 BBa_Z0152 BBa_T9502
BBa_Z0153 BBa_Z0154 BBa_Z0155 BBa_Z0156 BBa_Z0157
BBa_Z0158 BBa_Z0159 BBa_Z0160 BBa_Z0291 BBa_Z0292
BBa_Z0293 BBa_Z0294 BBa_Z0301 BBa_Z52934 BBa_X9999
BBa_Y00009 BBa_Y00029 BBa_Y1000 BBa_Y1001 BBa_Y1002
BBa_Y1004 BBa_Y1006 BBa_Y1007 BBa_Y1009 BBa_Y1010
BBa_Y1013 BBa_Y1014 BBa_Y1015 BBa_Y1016 BBa_Y2000
BBa_Z0101 BBa_Z0102 BBa_Z0103 BBa_Z0104 BBa_Z0105
BBa_Z0108 BBa_Z0110 BBa_Z0112 BBa_Z0113 BBa_Z0114
BBa_Z0115 BBa_Z0116 BBa_Z0117 BBa_Z0118 BBa_Z0119
BBa_Z0122 BBa_Z0123 BBa_Z0124 BBa_Z0126 BBa_Z0128
BBa_Z0130 BBa_Z0131 BBa_Z0135 BBa_Z0136 BBa_Z0138
BBa_Z0139 BBa_Z0140 BBa_Z0141 BBa_Z0142 BBa_Z0143
BBa_Z0144 BBa_Z0145 BBa_Z0146 BBa_Z0147 BBa_Z0148
BBa_Z0151 BBa_Z0152 BBa_Z0153 BBa_Z0154 BBa_Z0155
BBa_Z0156 BBa_Z0157 BBa_Z0158 BBa_Z0159 BBa_Z0160
BBa_Z0291 BBa_Z0292 BBa_Z0293 BBa_Z0294 BBa_Z0301
BBa_Z52934
Autogene

Retrieved from "http://2012.igem.org/Team:Johns_Hopkins-Software/PathogenDetection"